Acep005923.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Atta cephalotes
Gene Symbol
-
Assembly
GCA_000143395.2
Location
NW:2010772-2013718[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00021 0.012 15.2 2.2 2 23 365 386 364 386 0.97
2 15 0.00042 0.025 14.3 3.8 2 23 393 415 392 415 0.95
3 15 1.6e-05 0.00093 18.7 2.0 2 23 493 514 492 514 0.97
4 15 2.6e-05 0.0015 18.1 4.3 1 23 520 542 520 543 0.96
5 15 0.0021 0.12 12.1 0.6 1 20 548 567 548 570 0.94
6 15 2.1e-06 0.00012 21.6 0.8 1 23 588 610 588 610 0.98
7 15 9e-07 5.2e-05 22.7 1.2 1 23 616 638 616 638 0.97
8 15 4e-06 0.00023 20.6 2.4 1 23 644 666 644 666 0.98
9 15 0.001 0.058 13.1 0.2 1 23 672 694 672 694 0.99
10 15 0.00012 0.0068 16.0 0.1 3 23 702 723 700 723 0.92
11 15 1.4e-05 0.00082 18.9 1.3 1 23 729 751 729 751 0.98
12 15 0.00031 0.018 14.7 4.7 1 23 757 779 757 779 0.98
13 15 4e-06 0.00023 20.7 0.4 1 23 785 808 785 808 0.97
14 15 2.8e-06 0.00016 21.1 0.9 1 23 814 836 814 836 0.96
15 15 6.8e-07 3.9e-05 23.1 4.8 1 23 842 864 842 864 0.99

Sequence Information

Coding Sequence
atgaacaaaGAAATGCCGTTAAGTGTGGAATGGATAtcacaaaatacatatatgcacaATTCTTTCGACCACTTGCTACCGGaagataaaaatcaagatttcttAATCATAAAACAAGAAGCAGAATTCTTTCAAAGTACTCTGAATTCACAGCAATCTGCACAAAACAAAATCATGCATCTGCAAGTTTTGTCTAAAGAGAATAAGGAAATCAAACAACAGAACAATTATTTAGATCCAAcaCCCTGTCAAATAGATTCTTTAAATCAACTATCCAAAAGATTGACTGATGATTCAgagaaattgtataataaaggtCGCATCGACGTAATAGAGATGACAATTGATTCaacattgaattataaatatttttttgtttatgaaGATCAATTTTCCAAATTTGTTGTACTAAAGGCTCTCCGTAGCAATACAGCTAAAGAGGTTGCGGCGAATCTATTAGATGTATTGGGGATCATAGGAGCACCACAAGTATTACAGAGCGGCAATGGACGTATGTTTGCTGAACAAATTGTATGTGAACTACGTTCGATGTGGCATGATTTATTCATACTGCATGGAGACACGTCTAAGTGCGAAGTTAGCTACAGGGATTTTAAGAGCTCACTTGAATCttggatgaaaaaaaatccaaCTAGAACCTGGTGCGAGGGACTGAACTTCATACAGATTGTTCATAACACTACGTATCGCTATCAGAATGGCAGAGTTCCATATGACGTATTGTTCAGACAAAATGCACGCAAGAATTTTCAAGGTATAGGAAAAGATACAGAAAATTTGACAACAGAAGAAGAATGGATTAAACATTTGTCGGATAAGATGGATGGAGGTGAGGCTGCAATGATGGAAGACACACAGAGtacatcaaataatatcaatCAGTGCgaagaaaacgaaaatataCGAGATACACAGAATCAAAATACACTTTCAAAAACCAACAATGCAAATATTCTTAGTTGTGTCGTGAAGAATGATGATCTGAATAATGTACATATGATGGATTCAACATCTACCGATAAAATAGTCATAAAGAATGAATCAAAAGACAACGAAGATACTCAATCCCTCAAATGCGAGTACTGTCAAAagcaatatatgaaaataggGCATTTGAAAAACCACATAAGAATTCACAAAGCGAAACAGATTCTCCATTGTAAGCTGTGCAATAAAACGTTTAGCGTTCTGAGATTGTTTGAGAAACATATGAAGCAATCACATGGAAAAGATAAAGCTGAAGAAAGAGGGATACCAATcagaaaaacaagaaacattGCTAATACAAGATCTATGATTCAACTAACACAAGAAACATCCGATctcaaaatgaatgaaaattgtgATTTGTCGCTTGATACGAGAGAATCCTTTGGCAAAGACAATAAGAGCTCCAACCAAACCGGGAGACGGAAACTGCCCGCGGAGAATCGTGTATCAAAGACACAACCTCTAAAGTGTACATTTTGTAAGCAGAAATTCAGTTTTCCGAGCGTGCTAGAAAGACATATGCGATCGCACACAAATGAACGACCGTACGAGTGCGAAGTATGTAAAAAGAGTTTTAAACAACTGGGTCATCTCAGTCAACACTCACTGACCCATCATGACTATCGTTCATTCCAGTGCACAGTATGCAGCATAAAGTTCGACTCGCTAGATTTGCTGAAGCAACATACACCCTCGCATAAAAGCGACGCCACGACAACGACATCAAAGGTACGCGATGTTTATCGTCTGTTTGAATGTGATATCTGCAAAAAGGTATTCACAATGAAGAGTGTGCTAGAGCGACATATATTCACGCACACGCAGGAACGTCATTATGACTGTAAGGTGTGCGGCAAGCGATTCAAGCAAGCTGGTCATGTCAAGTCACACATGTTGGTACATACTGGCGAGCGTCGTTTTCAGTGCACCATATGTTCAAAACGTTTCAGTCTGTCAAACTCGTTGAAGAAGCACATGTACGTGCACAATGGTGAAAAGCCATATCAGTGCGATGTTTGCGGTGCACGTTTCCTTGAGAAGCGCAACCTTAACGGCCACTTGCTGACGCATACCAACGAACGTCCGTACGGCTGCAAGATCTGCGGTAAACGGTATACTCTGGCGGACACTTTGCGCCGTCATGTCAGTGCCGCGCATGAAGATGGTCGTACATATCAGTGTGAGATTTGTGCCAAGATGTTCAAGCAATTGGCACATCTGTCGGTGCACAAAAAGGTACATAACGACGAACGACCGTTTCAGTGTCATTTATGCGAAAAGAACTTCAAGCATAAGAATGTACTCAAGTCACACCTGGCAATCCACGCGAATGTACGGCCATTCGAGTGTGATGTATGCAAGGCGACATTTGTCAGGAAGACGAATCTGCAGACGCACATCTCGTCAGCGCACATGAACGAGCGTCCGTATACCTGCACCATCTGCGGCAAGCGCTTTAAGCAGATTAGTCATCTAAATGGCCACGTGGTAGTGCATAGCAATTTGATGCCTTACAAGTGTGATTACTGCGATCGCCGATGCAATCGactagataatttaaaaaagcatatgcgccTCCATACgaaaaataaggaataa
Protein Sequence
MNKEMPLSVEWISQNTYMHNSFDHLLPEDKNQDFLIIKQEAEFFQSTLNSQQSAQNKIMHLQVLSKENKEIKQQNNYLDPTPCQIDSLNQLSKRLTDDSEKLYNKGRIDVIEMTIDSTLNYKYFFVYEDQFSKFVVLKALRSNTAKEVAANLLDVLGIIGAPQVLQSGNGRMFAEQIVCELRSMWHDLFILHGDTSKCEVSYRDFKSSLESWMKKNPTRTWCEGLNFIQIVHNTTYRYQNGRVPYDVLFRQNARKNFQGIGKDTENLTTEEEWIKHLSDKMDGGEAAMMEDTQSTSNNINQCEENENIRDTQNQNTLSKTNNANILSCVVKNDDLNNVHMMDSTSTDKIVIKNESKDNEDTQSLKCEYCQKQYMKIGHLKNHIRIHKAKQILHCKLCNKTFSVLRLFEKHMKQSHGKDKAEERGIPIRKTRNIANTRSMIQLTQETSDLKMNENCDLSLDTRESFGKDNKSSNQTGRRKLPAENRVSKTQPLKCTFCKQKFSFPSVLERHMRSHTNERPYECEVCKKSFKQLGHLSQHSLTHHDYRSFQCTVCSIKFDSLDLLKQHTPSHKSDATTTTSKVRDVYRLFECDICKKVFTMKSVLERHIFTHTQERHYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTICSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYGCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYTCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00417757;
90% Identity
iTF_01476420;
80% Identity
-