Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: ZNF236
Assembly: GCA_001594065.1
Location: NW:1275762-1283989[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 5.8e-07 3.5e-05 23.4 0.9 1 23 25 47 25 47 0.99

2 22 2.6e-05 0.0016 18.2 0.2 1 19 53 71 53 72 0.97

3 22 9.5e-06 0.00059 19.6 1.2 1 23 81 104 81 104 0.96

4 22 0.0021 0.13 12.2 1.6 1 23 113 136 113 136 0.97

5 22 6.9e-07 4.2e-05 23.2 0.3 1 23 258 280 258 280 0.98

6 22 0.00043 0.027 14.4 0.8 1 23 286 308 286 308 0.99

7 22 0.049 3 7.9 3.6 1 23 314 336 314 336 0.97

8 22 8.2e-05 0.0051 16.6 2.7 1 23 340 362 340 362 0.98

9 22 0.0052 0.32 11.0 6.0 1 23 417 439 417 439 0.97

10 22 2.5e-05 0.0015 18.3 4.9 1 23 445 467 445 467 0.99

11 22 3.9e-06 0.00024 20.8 1.7 1 23 473 495 473 495 0.98

12 22 0.00035 0.021 14.7 8.7 1 23 501 523 501 523 0.98

13 22 0.42 26 5.0 1.1 2 23 873 894 872 894 0.89

14 22 0.00012 0.0076 16.1 3.7 1 23 900 922 900 922 0.99

15 22 0.048 2.9 7.9 1.2 2 23 929 950 928 950 0.96

16 22 2.2e-08 1.4e-06 27.8 1.4 2 23 1025 1046 1024 1046 0.98

17 22 7e-05 0.0043 16.8 5.0 1 23 1052 1074 1052 1074 0.99

18 22 0.00023 0.014 15.2 4.0 1 23 1080 1102 1080 1102 0.97

19 22 0.00027 0.016 15.0 3.1 1 23 1108 1130 1108 1130 0.99

20 22 2.5e-06 0.00015 21.4 0.6 2 23 1366 1387 1365 1387 0.97

21 22 0.0001 0.0062 16.4 6.0 1 23 1393 1415 1393 1415 0.98

22 22 0.00033 0.02 14.7 7.8 1 23 1421 1444 1421 1444 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	5.8e-07	3.5e-05	23.4	0.9	1	23	25	47	25	47	0.99
2	22	2.6e-05	0.0016	18.2	0.2	1	19	53	71	53	72	0.97
3	22	9.5e-06	0.00059	19.6	1.2	1	23	81	104	81	104	0.96
4	22	0.0021	0.13	12.2	1.6	1	23	113	136	113	136	0.97
5	22	6.9e-07	4.2e-05	23.2	0.3	1	23	258	280	258	280	0.98
6	22	0.00043	0.027	14.4	0.8	1	23	286	308	286	308	0.99
7	22	0.049	3	7.9	3.6	1	23	314	336	314	336	0.97
8	22	8.2e-05	0.0051	16.6	2.7	1	23	340	362	340	362	0.98
9	22	0.0052	0.32	11.0	6.0	1	23	417	439	417	439	0.97
10	22	2.5e-05	0.0015	18.3	4.9	1	23	445	467	445	467	0.99
11	22	3.9e-06	0.00024	20.8	1.7	1	23	473	495	473	495	0.98
12	22	0.00035	0.021	14.7	8.7	1	23	501	523	501	523	0.98
13	22	0.42	26	5.0	1.1	2	23	873	894	872	894	0.89
14	22	0.00012	0.0076	16.1	3.7	1	23	900	922	900	922	0.99
15	22	0.048	2.9	7.9	1.2	2	23	929	950	928	950	0.96
16	22	2.2e-08	1.4e-06	27.8	1.4	2	23	1025	1046	1024	1046	0.98
17	22	7e-05	0.0043	16.8	5.0	1	23	1052	1074	1052	1074	0.99
18	22	0.00023	0.014	15.2	4.0	1	23	1080	1102	1080	1102	0.97
19	22	0.00027	0.016	15.0	3.1	1	23	1108	1130	1108	1130	0.99
20	22	2.5e-06	0.00015	21.4	0.6	2	23	1366	1387	1365	1387	0.97
21	22	0.0001	0.0062	16.4	6.0	1	23	1393	1415	1393	1415	0.98
22	22	0.00033	0.02	14.7	7.8	1	23	1421	1444	1421	1444	0.98

Sequence Information

Coding Sequence: ATGCACGTTCGCGAGCATTATAGGACGAAGATAGTAAAGCAAACTAAGAGGGGAACGAAACATAAAACTATGTACAAATGTACCATATGCTTGAAGACTTTCCAAAAACCGAGCCAATTAATACGACATATCAGAATACATACTGGAGAAAAGCCCTTTGAGTGTACTGTCTGCAACAGAGCGTTCACACAAAAGAGTTCGCTACAAATTCATGCATGGCAACACAAGGGCATTCGGCCACATACTTGCAGTCTTTGTAACGCCAAGTTTAGTCAAAAAGggaATCTAAAGGCGCATATACTCAGAGTGCACAATGCACCAGAAGGTGAGTCAACGTATGCATGTTCCTCTTGTTCCTGCGTTTTTAAGAGACTAGGCAGTTTAAATGGACACATAAAGCGAATGCATTCTATTTCCTCGGAGGAATCCAACGCCAAATCCTTCGAAGCTAATCCTATCTCGTCGGAAGCTGAAATGCGCGCGACCGTCGACAGTGTTATATCACAATTGGCATCTTTGGAATCTATTGTGAATAGTACTGCAGATTCTACAAGAACTACAACTTTAAGTGCGGAACAGAATGATATTTTACAGCAGGCATTAAAAAACAGTGGTTTACCGAACAAAAGCGATGTCATTTCGAAAGAAACCGCAGAACCAAAGAAGACTGATTCATCAACGTCGTATGTCACGCTAGTAGACAGAACTGCTGGTGGTACTTCGAgGAAATATCTCACCATAAAACAACGCTGCATAGGAAACGTACGGTGGTATGCGTGTTCGTTTTGCCCGAAAGAATTCAAAAAGCCGTCGGATTTGATACGTCATTTGCGCGTACACACCCAAGAGAAACCCTTCAAgtGTATGTATTGCGTGCGTTCTTTTGCGCTAAAATCGACAATGATAGCGCACGAACGGACTCATACTGGAGTGAAGAAATACGCCTGCGAGTCCTGCGACAAAACCTTTGCGTGTCATAACAGTCTTACCGCTCACACCAAATTACACACAAAACCGCACAAGTGTAACATATGCGACAAATCATTTAGCGCGAGTACCATCCTAAAAAATCATATGAAAAGCCATACGCGGGAGAAGCCTAAAATGTCGTCGGAGGCGGAGAGCCTGGTACGACAAGTGGTACTGCAAGAACCGCTCGTCATTAGCGACGCTGGTAATAAAATTAGCGTGGCACAAGTGCAGTCGAAACAGAAACAATTGTACGAAAACGTCGGCGTGGCCAGGCCGCACGAATGTTGGGTTTGTCACGCGGCGTTCAGGAAAGTTAGTCATTTGAAGCAACATTTTCGTAGGCATACAGGCGAGCGTCCTTACAAGTGTTCCAAGTGCGACAGGAGATTCACGTCAAACAGTGTTCTGAAATCTCATTTGCATACACATGATGATACGAGGCCATACAGTTGTTCTGTATGCGACACGAAATTCTCCACGCAGAGCAGCATGAAGAGGCATTTGGTCACACATAGCAATAAGAGGCCATACATGTGTCCATACTGTCACAAAACATTTAAGACATATGTCAATTGTCGAAAGCACATGAAGAGGCACAAACACGAGCTGGCGCAACGACAATTGGAGGAACAAAAGATACAAGCTCAGAAGGATCCACAGTCTTCGAGTGAAACTAAGGATGCTATTGGATCAGTGTTACCGGAGAACATCGAAGATATGGAGGTGTCATTTCAACCGCAAATGGCACCGGATTTTACGCAGGCTTTTTCCGATCAGTTTCAAGATATCAGcacagagaaagaaaaatcttttctaCTACCGGACAACACAACACCATCGATAGTGAATCaaaatttatctGTCGACACAACTACTTTGGGAACGCCGCAAACTCTACACGCCGATGAAACTGGTACTATCACGTTACCTAATTACTCAGGGGATCAAACTTTCACGCCGGAAAGTATACGAGAGATAGAGGAGACTCTGAATCAACAATTGTTTAACATGGGTATGAATCTCGGGCTGGGGACAAATAATTTGCCGAGGCAGATGGACGAGGTGAACACGAATTCTCACAATTCTAGAGAACAGCCGatgcttaatattatatatgaacatAACAAATCTCTGGAATCGTCAGGCAATACCATATTCATGTCACAATTTGATTCGTTTGATATGAACCAAATAACGTTGCAGACGGATAACGATATAGATATTGGTTTAAATCCGAGCAACTCTATGTCTAGTATTTTGCCTAGATCTGTGGAAAGCCAACAAGAGGAACAACAAGCTGTTCCAGTTACTACAACTAGCAATATAGACGCTTCTCAAATTACGAGAAACACTCATCTGGTGATAATAAATCCCAAGGAAAATTGTTCGGAATTAGTGAGACTTTCGCAAGTATGCCCATCGAAATACTCGAAAGTCATCGCGAAAGCTGACACCACAAATGGATCGGAGATGCAAGGCATGAATGAGCACGAAAAGGCAGGGCAAGCATCGCAGACAAGTAATGTTGTATCATgtgaaaatgaaacaaattgtttcatGAAGAATTTCCAAAGTACAATGCAGTCGGAGACGTTCGTTTCTTCGGACAACTCAGCCAAAATATTGCAATGTAACACTCTGCTGCAATGTCACATGTGCGGCGATCAAGGTTTCACGGCAGAGAGATTGAAGgaACATTTGAAATCTCATCGCGGTGACAAAGAGTATGAGTGTTCGGAGTGTTCTCAGCGATTCTGCACAAATCGTGGTCTCAGTAAGCATTTGAAGATGCATACGAACAAGCAGCGGTGGAAATGCATGATATGTCAGAAGGTACTGAGCAGCAAACTGCAAATGAAATATCACAGTAAGATGCATACCGGGACTTGGAATGTTTCGTCTATGGAGCCGGACAGTTCTCAGAAGGATCTTATTTCCTCGAGTTCCGGTTTGTCATCCGATCTAACAACGCTGGACGTCCGAGCAGATTCGAACCCTTCAGTTTCCGAGAAGGTTTTGATGGCCGCAGTCGCCGAGAAGAAAAGCATGGACCGCACTGACGAGAATATAGTGAAGAAAGAGATAAGGGAATACACTAATAAATGCAAGTACTGTCCGAAGACTTTCCGTAAACCAAGCGATCTCATCAGGCACATTCGTACGCATACGGGTGAACGACCGTACAAGTGTGATCACTGCAACAAGAGCTTCGCGGTTAAGTGTACTTTGGATTCGCACATGAAGGTTCATACAGGCAAGAAGACGTTCTGCTGCCACGTCTGCAGTAGCATGTTTGCTACAAAGGGCAGTTTGAAGGTCCACATGCGATTGCATACGGGTTCGAAACCGTACAAGTGTCTCGTGTGCGATCTTCGATTCCGCACTTCGGGTCATAAGAAAGTACATATGTTGAAGCACGCAAGGGAGCATAAGGGCGGTACAAAACGCAAGTCGAAACACTCTAAGATCGCTGCGGTGGCGGAAGCGGCGGCCAGCCTCGAAAAAATCGACAACAGTTCTCTTAATAATGCGTCAACAGCAACGACTACTGCTATAATTAACGATGAAATCGCGCCATCGCAAACCTTGGCAGATTATCCCACGTTAGAGCAAACAGTGAATCTCGGTACCGCGGTTCATCTACCGAATCAAATCGCGTTTAATCACACTGACACGACGACGACAATCAATAACAATTCGATATTGTCTGTGAACGAAAACAACCAACTGGTGGCGAATCTACAGTTCTTGTTGGCAAATGGTTTGGTCACTTTTCAAACGGACGATACCCTGCTGACGCAATCGACGATAAACAGTTCTGATGCTACCGGCGCCGACATGTCAACTAACGTAATCGAATTAGTCAATCCAGATCCTTTTCATGAAACTTGTAACTTGGGTAACAACAATCACGTGGTGATAACCAGCCAAGTGCCAGCGGAGACGACGACCGCAGATATGAGCAACACAGCGGTTATTCAAATGAATAATTGTACGCCTCCTGTATCTATGATACAAATTCAAACTCAAGATACAAATAGCGTCGGTGTGTTTGAAGCGAAAACGAGTGATcaaacaacaacaacaacgaTGACGAAAGCTTCGGCGCAGACTTCAAGCAAGGAGTGCGATGTATGCGGAAAAACGTTCATGAAGCCGTATCAATTGGAACGACACAAACGTATTCATACGGGGGAACGACCATTCAAGTGCGAGCAATGCGGCAAATCGTTTGCGCAGAAATTTACACTGCATCTGCATCAGCAGCACCACACCGGTGATCGGCCATACTCTTGTCCACACTGCAAGCGCCTGTTCACGCAGAAATGCAACTTACAGACACATCTGAAACGCTTCCATCAGATGGTCATGCTCGATGTTAAAAAGCTGAAGAGCGGCCAACAGATGCTAGGCACGCTTCTACAAGACAATCAAGGCGGAGATACTAAGCTGCTAAACTTGGACGACATACTGGTGGTAgattttctcaaataa
Protein Sequence: MHVREHYRTKIVKQTKRGTKHKTMYKCTICLKTFQKPSQLIRHIRIHTGEKPFECTVCNRAFTQKSSLQIHAWQHKGIRPHTCSLCNAKFSQKGNLKAHILRVHNAPEGESTYACSSCSCVFKRLGSLNGHIKRMHSISSEESNAKSFEANPISSEAEMRATVDSVISQLASLESIVNSTADSTRTTTLSAEQNDILQQALKNSGLPNKSDVISKETAEPKKTDSSTSYVTLVDRTAGGTSRKYLTIKQRCIGNVRWYACSFCPKEFKKPSDLIRHLRVHTQEKPFKCMYCVRSFALKSTMIAHERTHTGVKKYACESCDKTFACHNSLTAHTKLHTKPHKCNICDKSFSASTILKNHMKSHTREKPKMSSEAESLVRQVVLQEPLVISDAGNKISVAQVQSKQKQLYENVGVARPHECWVCHAAFRKVSHLKQHFRRHTGERPYKCSKCDRRFTSNSVLKSHLHTHDDTRPYSCSVCDTKFSTQSSMKRHLVTHSNKRPYMCPYCHKTFKTYVNCRKHMKRHKHELAQRQLEEQKIQAQKDPQSSSETKDAIGSVLPENIEDMEVSFQPQMAPDFTQAFSDQFQDISTEKEKSFLLPDNTTPSIVNQNLSVDTTTLGTPQTLHADETGTITLPNYSGDQTFTPESIREIEETLNQQLFNMGMNLGLGTNNLPRQMDEVNTNSHNSREQPMLNIIYEHNKSLESSGNTIFMSQFDSFDMNQITLQTDNDIDIGLNPSNSMSSILPRSVESQQEEQQAVPVTTTSNIDASQITRNTHLVIINPKENCSELVRLSQVCPSKYSKVIAKADTTNGSEMQGMNEHEKAGQASQTSNVVSCENETNCFMKNFQSTMQSETFVSSDNSAKILQCNTLLQCHMCGDQGFTAERLKEHLKSHRGDKEYECSECSQRFCTNRGLSKHLKMHTNKQRWKCMICQKVLSSKLQMKYHSKMHTGTWNVSSMEPDSSQKDLISSSSGLSSDLTTLDVRADSNPSVSEKVLMAAVAEKKSMDRTDENIVKKEIREYTNKCKYCPKTFRKPSDLIRHIRTHTGERPYKCDHCNKSFAVKCTLDSHMKVHTGKKTFCCHVCSSMFATKGSLKVHMRLHTGSKPYKCLVCDLRFRTSGHKKVHMLKHAREHKGGTKRKSKHSKIAAVAEAAASLEKIDNSSLNNASTATTTAIINDEIAPSQTLADYPTLEQTVNLGTAVHLPNQIAFNHTDTTTTINNNSILSVNENNQLVANLQFLLANGLVTFQTDDTLLTQSTINSSDATGADMSTNVIELVNPDPFHETCNLGNNNHVVITSQVPAETTTADMSNTAVIQMNNCTPPVSMIQIQTQDTNSVGVFEAKTSDQTTTTTMTKASAQTSSKECDVCGKTFMKPYQLERHKRIHTGERPFKCEQCGKSFAQKFTLHLHQQHHTGDRPYSCPHCKRLFTQKCNLQTHLKRFHQMVMLDVKKLKSGQQMLGTLLQDNQGGDTKLLNLDDILVVDFLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523538;
90% Identity: iTF_01477787;
80% Identity: -