Ccal002310.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- -
- Assembly
- GCA_963942595.1
- Location
- OZ012703.1:10520496-10522778[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.4e-06 0.00028 22.6 1.0 1 23 18 40 18 40 0.97 2 16 0.043 8.6 8.5 1.4 1 23 46 68 46 68 0.85 3 16 3.1 6.3e+02 2.6 0.6 1 23 74 97 74 97 0.92 4 16 2.3e-06 0.00047 21.9 0.9 1 23 103 126 103 126 0.97 5 16 7.5e-05 0.015 17.2 5.0 1 23 139 162 139 162 0.98 6 16 0.00099 0.2 13.6 0.2 1 23 172 194 172 194 0.95 7 16 0.0051 1 11.4 0.2 2 23 269 291 268 291 0.96 8 16 6e-05 0.012 17.5 1.6 1 23 297 320 297 320 0.97 9 16 1.4 2.8e+02 3.7 0.0 2 23 326 348 325 348 0.93 10 16 7.2e-05 0.015 17.2 0.1 1 23 353 375 353 375 0.97 11 16 0.0064 1.3 11.1 1.5 2 23 382 404 381 404 0.95 12 16 0.00083 0.17 13.9 2.1 2 23 425 447 425 447 0.96 13 16 0.0021 0.43 12.6 0.1 1 23 458 480 458 480 0.95 14 16 0.0082 1.7 10.7 3.6 1 23 486 508 486 508 0.94 15 16 3.1e-07 6.3e-05 24.6 1.7 1 23 514 536 514 536 0.98 16 16 3.1e-05 0.0062 18.4 0.3 1 21 542 562 542 563 0.96
Sequence Information
- Coding Sequence
- ATGACGAAACTGGTGGAGCACTTGAAGAACGTACACGGCATCGAGCGAGCATTTCATTGCGACGAGTGCGGCAAGGCCTTCAAAAGTCCCTCGAACATAATGCGTCACAAGCTCATACACACGGGCCTAAAGAAGTTTGTATGCGATCTGTGCGGTTGGGCGTGCAATCAGAAGAGTAAATTAGATTTTCATCGTGGTCGACACGCGCAGGATTATGCTTATCACTGCCAACCCTGCGCCAAAGGATTTTTTATCAAGAGCGAGTACGACGAGCATATGGAGAATATTCACGCGGAacggaaaaaatattattgtgaAATTTGCTCGAAAACTTATGGCTACAAGAGGAACTTGACTGCTCACATGAGAGCTAATCATTCGGAATTTATGACGGAACTAATTGCGCCGATAAAGTACACTTGCAAGCTCTGTACGAAGGGCTTTGCATACACTAGACATTTGAATAATCATATGAAGAAACGTCACGGCATAGTGACGGGTAAAGTTCGACAATTTCTCTGCGATCTTTGCGGTCTGAATGTCTCCTCGAAGAAGGCCCTGGAAGCTCACAGAACAACGCATGTTGGCCAGAAAATTACCAGCTGCGATATTTGCGGAAACGGCAACAAGGAGAGCCTTAACGTTCATAGACGAATTCATACTGGAGAAAAACCCCACTGGATCACGAATAACGATCGACTTCCCATGGATTCCGAGCTTTCGATCAAGAGCGAGGATCAGGACCTAATAGTCGACGGTATCGAACCTTCACCGAAAGTCGAAGAATACGAGGGCAGTCAGAAGAGATGCGAACTCTGCGgcgaaaaattttatttcgtgACGCGTCTCGTGGCTCATCTTCGTATTGCCCACGGTATTCTAAGGCCGTTCAAGTGTCTCGAGTGCGAGAAGACGTATCCCCATCAGTTTCTTCTGAACGCTCACGTGAAGAAAATTCACACACCGAAGACGGTACCGTGCGGTGATTGCGCATTCATGGGTGTCTCGGTGAGCGACGTCGAGAGGCACAGAAAGCGCAATCACCGTGTAACGCGGTACATCTGCGAGATATGCAGCCAAACGTTCGACGACGAGTCGTCCCTGGTAACGCACACGGCGATGCACGATTTCATGCAGTTTCAGCAGTGTCACGCGTGCGGAAGTACCTTCAACGACGCGCGCACCCTCAGGGATCACAATCGTCTGTATCATTACGATCCCGCGGCCGAGCTCGCCGCTAGAACCGTCAAGGTAGAGGATAGCCCGGAAAATCGGTGCGAAATATGTAACAAGATTTTTAAGTACAAATCGATATTGAAACAGCACAGATCAAGGAGTCACGGTGAGCCGACGATGTACGAGAAGCGACGTTATCTCTGCGCTCTCTGCGGCAAGGAGCTCAAGACCGCCAAGGGCCTGGAGATTCACAACAGATCGCACACCGGCGAGAAACCCTACACCTGCGAGGTTTGCGGCAAGTGCTTCGCCTGCGAGACCCTTCTCCGCACTCACAACGTCACCCACACCGGCGAGAGGAAGTACTCGTGCGACCAGTGCGGGAAATCGTTCACTCAACGATCCACCCTTGTCGTTCATAAGCGTTATCACTCGGGCGAGAGACCGTACGTCTGCACCCGATGTGGCAAAGGATTTGTCACGCGAACTGTTCTAAAAACTCATATGAAGTCGTGCCGTCTTTAG
- Protein Sequence
- MTKLVEHLKNVHGIERAFHCDECGKAFKSPSNIMRHKLIHTGLKKFVCDLCGWACNQKSKLDFHRGRHAQDYAYHCQPCAKGFFIKSEYDEHMENIHAERKKYYCEICSKTYGYKRNLTAHMRANHSEFMTELIAPIKYTCKLCTKGFAYTRHLNNHMKKRHGIVTGKVRQFLCDLCGLNVSSKKALEAHRTTHVGQKITSCDICGNGNKESLNVHRRIHTGEKPHWITNNDRLPMDSELSIKSEDQDLIVDGIEPSPKVEEYEGSQKRCELCGEKFYFVTRLVAHLRIAHGILRPFKCLECEKTYPHQFLLNAHVKKIHTPKTVPCGDCAFMGVSVSDVERHRKRNHRVTRYICEICSQTFDDESSLVTHTAMHDFMQFQQCHACGSTFNDARTLRDHNRLYHYDPAAELAARTVKVEDSPENRCEICNKIFKYKSILKQHRSRSHGEPTMYEKRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKSFTQRSTLVVHKRYHSGERPYVCTRCGKGFVTRTVLKTHMKSCRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00058121; iTF_00058881; iTF_01364837;
- 90% Identity
- -
- 80% Identity
- -