Ccal023301.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- -
- Assembly
- GCA_963942595.1
- Location
- OZ012706.1:11290468-11296534[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.4e-13 2.5e-09 38.1 0.0 1 39 280 319 280 323 0.90 2 4 3.3e-12 9e-09 36.4 0.1 2 39 335 372 334 375 0.94 3 4 1.2e-18 3.3e-15 57.0 0.0 2 45 390 434 389 434 0.97 4 4 1.5e-18 3.9e-15 56.7 0.0 1 42 441 483 441 484 0.97
Sequence Information
- Coding Sequence
- ATGATCCGAGTTTCGGGTGTGTCCTTGCTGAAGACGGCAGATCAGCTGAAGATCAAGGGCCTCTGCGAGGTCCCGGAGAGCAGGGAAGGACCGCCCTCGGTAAGCTTAACCTCACCACCGCCCCGGGAGTCCGGCACTGCGAGGCTCAATTACACAAAACTAAAGAGGCATCATCCGCGATACAAGAGGCAGAGAACgactttcgagccgagagcCACGAGTACGGATTCGCATCAGTACGACAAGTACAAAGAGGAAGAGCACAACATCGAAGGCCTCGGCCGTGACAACAACAAAGAGAACCACAGAGGTGATTGGCAGACGGAGGATGAGGAGTGCGGCGCAGAGGCAGCATCAGTAGTCCTGGAATCCTGCCAGCGCGACAGCAACAACGGTAACGGTACAAACAACAATAACGGTGACATGTTCTGTCACACAGGGCTAGGTCATTACGGTCATCATCCGGATCCTGGAGAGGTAGATTTGCCGCCCGAAACTCAACCAACACCACCTAGTGCAACGCTAGTCGGTACAACGATAACGCATCTTCGTGACAGCGATCATCACTCGACCGACATTCAAAACTGTGATAGCGTAAAGATCAAATTCGAGACTCTTCACACGATGGATTCGTCAGATACTATCGACATCGACAGTCACATGTCGGATCGGGCGAGTGTGAGTTCCAAACATGCTGCCGATAACGACAACATGATGATGATAACGCCGGAACTCTTAGGCCTCATGCCTTCCGGGAGCTCGGTACACTCGGATTCCGGTGAAAATAATTCGAGAGGCGGAGGTTCGGGTTCTCATCATCATGGATCCAAATCGTGGACGCAGGATGATATGGACGCGGCACTCGAGGCTCTGAGGAATCACGATATGAGCCTCACGAAAGCGTCAGCGACCTTTGGAATCCCCTCGACGACACTCTGGCAACGAGCTCACAGACTGGGCATCGATACACCTAAGAAAGACGGGCCAACGAAATCGTGGAGCGACGAGAGTCTCAACAACGCACTCGAAGCTCTGAGAACCGGTACGATTTCCGCGAATAAAGCTTCCAAAGCTTTCGGCATACCGTCCAGTACGCTGTATAAAATCGCGAGGAGAGAAGGAATAAGGCTCGCGGCACCTTTCAACGCTAGTCCGACAACCTGGTCGCCGGCCGATCTCGACAGAGCCCTCGAAGCTATCAGATCCGGTCAAACATCGGTCCAGAGAGCTTCCACGGAATTTGGAATACCCACGGGCACTCTGTACGGTAGATGCAAGAGGGAAGGCATCGAGTTGAGCAGAAGCAATCCGACACCATGGAGCGAAGACGCGATGACAGAGGCACTCGAAGCTGTCAGGTTAGGCCACATGAGCATAAATCAGGCTGCTATTCACTACAATCTTCCTTATTCGTCGCTGTACGGACGTTTTAAAAGGGGAAAGTACGAGGATCCGGTGGTCAGCGAGATGTCACAAGACGGCAGTAATCCGCACTTTCATTCGCATCAGAGTCCGCATCAGAATCACTCGTCCTCCCTCCCCGACCAAATGCCTTATCAGGGTAGCTGA
- Protein Sequence
- MIRVSGVSLLKTADQLKIKGLCEVPESREGPPSVSLTSPPPRESGTARLNYTKLKRHHPRYKRQRTTFEPRATSTDSHQYDKYKEEEHNIEGLGRDNNKENHRGDWQTEDEECGAEAASVVLESCQRDSNNGNGTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKHAADNDNMMMITPELLGLMPSGSSVHSDSGENNSRGGGSGSHHHGSKSWTQDDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEDPVVSEMSQDGSNPHFHSHQSPHQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306165;
- 90% Identity
- iTF_01560354;
- 80% Identity
- -