Cstr021728.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387699.1:9706078-9713400[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0019 52 4.7 0.1 14 44 140 170 134 174 0.90 2 10 0.00065 18 6.1 0.1 21 43 175 197 171 201 0.91 3 10 1.4e-06 0.04 14.6 0.2 21 52 203 234 198 236 0.89 4 10 0.016 4.5e+02 1.7 0.1 22 43 258 279 249 284 0.85 5 10 0.0033 90 3.9 0.1 21 43 285 307 280 314 0.89 6 10 0.00031 8.4 7.2 0.2 11 45 314 349 304 356 0.76 7 10 0.0028 76 4.1 0.1 21 43 353 375 349 380 0.90 8 10 0.00083 23 5.8 0.8 21 43 381 403 376 409 0.89 9 10 0.0014 38 5.1 0.0 20 48 408 436 404 440 0.84 10 10 0.00081 22 5.8 0.0 21 43 437 459 427 464 0.87
Sequence Information
- Coding Sequence
- ATGTCATTGGAAGCACGCGTGAAAGAGGAGCCTCAGGATTGCACGGAACCGGTGTTTGTAAAGGTGGAAGTGGAATATGAGGGTCCATATGAGGTGTACGTGAAAGAGGAGCCCCTGTGTGAACACAGCATCCCGTATGGTGAGGACGGCGTCCCCAATGATGGGACAGATGAGTCGTCCGGCCTGTACTCGGATCATGTGGTCAAGCTTGAGCCACCAGAGCTGGAGCAATCGCAGTTTGATGAAGACCACAATCTTTATGGTGGGGTCGGAGTTTCGTCTGAGCAGACCACAGAGGGGGTTGCAGGAGCGTCCGGGGGCAGCGGAGGGCGGGGCGAGCTCATGCTAGTACTGGAGCCCCTTACCATGCAGGTGCACACGCAGAGGGTCAAGCCGCAAGAGGAAGGAAGCGCGGGGGCGCCGGCCTCGCGACGGAAACCGAAGAAAGAACACATTTGTCATATATGTACCAAGAACTTTAAAGACTCCACCAAATTAAAGGAACACATGAGGTGCCACACCGGTGAGAGGCCCTACCCCTGCAACATTTGTAAGAAAGGGTTCATCAAATCCGGCGATTTGAGAAGGCATGAGCGCTCGCACACGGGGGAAAAACCGTATTCCTGCAAGATATGCCAAAAACTGTTCTCGGAATCAACCACTTTAAGGCGACACGAACGGATCATGCATGGCGAGAAACCTATAGCCTCACAGGTGAAGAAATACAAACGATCAACCAATATCAAGGAATATGTGACGGCCAATGCGGGTGACAAACCCTTCGCCTGTGATGTATGTATGAAATCGTTTATTCGGGCTTGCGATCTAAAAAGACATGAACGCTGCCATACGGGTGAAAAACCATATTCTTGCGCGATGTGTGATAAACAGTTTGCCGAATCTACCACTTTGAAAAGACACGAGCGACAGCACACCGGAGAACTGCCGAAGCCACGCGAGAGCCTAGAGGCGAGTATAAAAGCGCGCACGTGCCAAATATGCGGGAAGTTGTTCAAAAAGTCGGCTATATTAAAAAACCATATAAGAACCCATACAGGGGAGAAGCCTTACCAGTGCGCAATGTGCGACAGATTGTTCGCACAACATTCCAACTTAAAATCACACGAACGAACGCACACCAATGAAAAGCCTTACATTTGTCAAGTATGCAAGAAGCAGTTCTCACAACATAGCACTCTGAGGAGACACGAGCGTACCCACAGGAACGAGAAACCATACTCCTGTGAGATATGCAACAAGACTTTCACACAGGGCAGTACTGTAAAGAGTCATATGAGAATACATACTGGCGAGAAGCCATATTCGTGCGGAGTGTGTAAAAGGATGTTTACGACTTCGAGTACTTTGAGAAAACATGAACAAACTCATACAGGGGAAACAAGCAGCGATTGA
- Protein Sequence
- MSLEARVKEEPQDCTEPVFVKVEVEYEGPYEVYVKEEPLCEHSIPYGEDGVPNDGTDESSGLYSDHVVKLEPPELEQSQFDEDHNLYGGVGVSSEQTTEGVAGASGGSGGRGELMLVLEPLTMQVHTQRVKPQEEGSAGAPASRRKPKKEHICHICTKNFKDSTKLKEHMRCHTGERPYPCNICKKGFIKSGDLRRHERSHTGEKPYSCKICQKLFSESTTLRRHERIMHGEKPIASQVKKYKRSTNIKEYVTANAGDKPFACDVCMKSFIRACDLKRHERCHTGEKPYSCAMCDKQFAESTTLKRHERQHTGELPKPRESLEASIKARTCQICGKLFKKSAILKNHIRTHTGEKPYQCAMCDRLFAQHSNLKSHERTHTNEKPYICQVCKKQFSQHSTLRRHERTHRNEKPYSCEICNKTFTQGSTVKSHMRIHTGEKPYSCGVCKRMFTTSSTLRKHEQTHTGETSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00411723;
- 90% Identity
- iTF_00412746; iTF_00410554; iTF_00411054;
- 80% Identity
- iTF_00412746;