Cfag030868.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750814.1:9953256-9956895[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0014 17 6.6 0.1 15 44 141 170 135 174 0.84 2 10 0.0019 24 6.2 0.1 21 43 175 197 171 201 0.91 3 10 4.9e-07 0.0061 17.7 0.1 21 53 203 235 198 236 0.91 4 10 0.16 2e+03 -0.0 0.1 23 43 259 279 255 285 0.84 5 10 0.008 1e+02 4.2 0.1 21 43 285 307 277 314 0.88 6 10 0.0011 14 7.0 0.2 13 45 316 349 307 356 0.78 7 10 0.0081 1e+02 4.2 0.1 21 43 353 375 349 381 0.89 8 10 0.0029 36 5.6 0.8 21 43 381 403 376 408 0.90 9 10 0.0005 6.2 8.0 0.1 20 48 408 436 404 440 0.85 10 10 0.00084 10 7.3 0.2 21 43 437 459 433 464 0.91
Sequence Information
- Coding Sequence
- ATGTCATTGGAAGCACGCGTGAAAGAGGAGCGTCAGGAATGCACGGAACCGGTTTTTGTAAAGGTGGAAGTGGAATATGAGGCTCCAGATGAGGTGCATGTGAAGGAGGAGCCCCTTATCGAGGACAGCGTCCCTTATGGTCAGGACGGCGTCCCATTTGATGGGACAGATGACTCGTGTGGCCAGTACTCCGATCATGTGGTCAAGCTTGAGACTCCACAGCTGGAGCAGTCGCAGTTTGATGAAGACGACAATCTTTATGGCGGGGTCGGAGTTTTGCCTGAGCAGACCACAGAGGGGGTTGCAGGAGCGTCCGGGGGGAGCGCGGGGCGGGGCGAGCTTATGCTGGTCCTAGAGCCCCTCACTATGCAGGTGCACACGCAGAGGATCAAGCCTCAagAGGAAGGGAGCGCGGGGGCGCCGGCCGAGCGACGGAAACCGAAGAAAGAGCACATATGCCCAATATGTACCAAGAACTTTAAAGACTCCACCAAATTAAAGGAACACATGAGGTGTCACACTGGTGAGAGACCCTACCCCTGCAATATTTGTAAGAAGGGGTTCATAAAATCCGGCGATTTGAGAAGACATGAGCGCTCTCACACGGGGGAAAAACCGTATTCCTGCAAGTTGTGCCAAAAAGTGTTCTCGGAATCAACCACTTTAAGACGACACGAACGGATTATGCATGGCGAGAAACCTGGAGACTCACCGGTGAAAAAATACAAACGACGAACCAATATCAAGGAAGATGTGACGGCCAATGTGGGTGGCAAACCCTTCGCCTGTGAAGTATGCCAGAAATCGTTCATCCGCGCCTGCGATCTAAAGAGACATGAGCGCGGCCATACGGGTGAAAAACCATATTCTTGCGCGATGTGTGATAAACAGTTTTCGGAATCTACCACTTTAAAAAGGCACGAGCGACAGCACACCGGAGAACTACCGAAGCCACGCGAGAGCCTAGAGGCGAGTATAAAAGCGCGCACGTGCCAAATATGCGGGAAGTTGTTCAAGAAATCGACTATATTAAAAAACCATATAAGAACTCATACAGGGGAGAAGCCTTACCAGTGCGCAATGTGCGACAGATTGTTCGCACAACATTCCAACTTGAAATCACACGAACGAACGCACACCAATGAAAAGCCCTACATTTGTCATGTATGCAAGAAGCAGTTCTCACAACATAGCACTCTGAGGAGACACGAGCGCACCCACAGGAACGAGAAACCATACTCCTGTGAGATATGCAACAAGACTTTCACACAGAGCAGTACTGTCAAGAGTCATATGAGAATACATACTGGCGAGAAGCCATATTCGTGCGCGGTGTGTAATATGATGTTTACGACTTCGAGTATTTTGAGAAGACATGAACAAACTCATACAGGGGAGACGAGCACCGATTGA
- Protein Sequence
- MSLEARVKEERQECTEPVFVKVEVEYEAPDEVHVKEEPLIEDSVPYGQDGVPFDGTDDSCGQYSDHVVKLETPQLEQSQFDEDDNLYGGVGVLPEQTTEGVAGASGGSAGRGELMLVLEPLTMQVHTQRIKPQEEGSAGAPAERRKPKKEHICPICTKNFKDSTKLKEHMRCHTGERPYPCNICKKGFIKSGDLRRHERSHTGEKPYSCKLCQKVFSESTTLRRHERIMHGEKPGDSPVKKYKRRTNIKEDVTANVGGKPFACEVCQKSFIRACDLKRHERGHTGEKPYSCAMCDKQFSESTTLKRHERQHTGELPKPRESLEASIKARTCQICGKLFKKSTILKNHIRTHTGEKPYQCAMCDRLFAQHSNLKSHERTHTNEKPYICHVCKKQFSQHSTLRRHERTHRNEKPYSCEICNKTFTQSSTVKSHMRIHTGEKPYSCAVCNMMFTTSSILRRHEQTHTGETSTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00411723;
- 90% Identity
- iTF_00413151;
- 80% Identity
- iTF_00410554;