Cstr008712.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia strobilella
Gene Symbol
-
Assembly
GCA_947568885.1
Location
OX387679.1:7585576-7590507[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.2 12 7.2 3.4 2 22 185 205 184 205 0.95
2 16 9.8 6.1e+02 1.8 1.5 1 23 305 327 305 327 0.79
3 16 0.31 19 6.5 0.2 2 23 462 483 461 483 0.96
4 16 0.99 62 4.9 1.0 2 23 560 581 559 581 0.96
5 16 0.069 4.2 8.6 1.6 1 23 589 611 589 611 0.97
6 16 0.1 6.4 8.0 3.6 1 23 646 668 646 668 0.95
7 16 0.00055 0.034 15.2 5.4 1 23 676 698 676 698 0.99
8 16 0.049 3 9.1 1.8 1 23 778 800 778 800 0.99
9 16 5.3 3.3e+02 2.6 2.3 1 19 855 873 855 877 0.90
10 16 0.97 60 5.0 0.5 2 23 884 905 883 905 0.92
11 16 0.22 14 7.0 1.0 1 23 971 993 971 993 0.92
12 16 0.0067 0.41 11.8 2.3 1 23 999 1021 999 1021 0.95
13 16 0.0075 0.47 11.6 2.6 1 23 1111 1133 1111 1133 0.97
14 16 9.9e-05 0.0062 17.5 1.2 1 23 1139 1161 1139 1161 0.99
15 16 0.83 51 5.2 2.2 1 23 1253 1275 1253 1275 0.96
16 16 0.002 0.13 13.4 4.5 1 23 1286 1308 1286 1308 0.98

Sequence Information

Coding Sequence
ATGGTGACCTGTACCAGTGATAACGAAACGAGCACTGAAACCGCTGCCAAAAAAGACATTGAACTGGCACAAGATACGCAACATCGACATTCGCCAAACAGCACGATGGGAGAAGGGAAAACAAACAAACAAAGCAGAAAAATACCCAGACCGATACCGCAACTAATACCCCTGAACACTTCGACGCCCAATCAAAATAAATCACCACCAGGAGAACCACCGCTCAAAAAGTTTAAAGAAGATCCAAGTAGAGATATTAATGCAGTTGATAATGTCGACAATTTACCAGCTGATATCACAATTATACCTGTCACCAATGGTACACCCCTTACTACAAAAGAAACCGCGGTGAAAAAGAAAAACGAATCCTTTTTTGACAGACTAAAAGAAAGGTTGCTAACGGCAACCGGAGAGGAAGGAACTTTGACATGCAAAAACTGCGGTTTTGAAAGCAAATGCTTATCAGAACATTCCGTACACGAAAAGAACTGCACTGCAGTATCTGCAAACAAGGTTTTGGCAAATAACACACACACGAGCCTTGGATCTACCCGTTGCCAGAATTGTCGGCATAGATGCAAATCAAGTGCCGATTTATATGTTCACATGCAAACATGCGGCAAAGTGGAGAAAGCAGAAAATGAACAATCAAATGACAGTGAAAACAAACACGTAACCACGTCAACAGCCCATGAAGCCGACTTTGTTAAAGATGAACCACATCCCATGGAGAATGTTGTCTTCGTTTGGAACAATATTAATCCCGATACCGCCAAATTTGAGACGCCGTTGGACATCAATATTAATGATGATTCAACTATGCCCGAATCAAATAAAAACTATGACTCAGAAATAGTTGATGAAAATGAAGGCATGAACTTGTCACCGAGCCAAGCTGCCGGAAAAAAGGTGTTTAAATGTCCGCACTGCACTTTCTGGGCATCGACCGCGTCACGGTTCCATGTTCACATCGTCGGACATTTGAATAAAAAACCTTTCGAATGCTCCCTCTGCAAATATAAGTCGAATTGGAGATGGGACATCACCAAGCACATAAAACTGAAATCAGCAAGAGACCCTGAACACAATGATGCAAAGGTTTTGATGACTGATGAAACTGGACGTAGGAACTACAGTAAATACAACAAGTTCTTAGCAGTGCCCGTCGTAAACGAATATGGAGAAACCGAGTTTGACTATATAGATCCGAACGCATTGGCGAACGGTAGCATGGAACTCGATGAATCATTCAACGAAACGAATGATAATATCAACACAACACTTGAAATGCAACCTCTTAACTTGCAAACTCTACATGGACAGCACAGTATCGAGACAATTGATATCAAAAACGAAGATCTGAAGCCTAAGAAAACGATGTGGAAATGCAAAAAATGTAACTACAAGGACCCATCGAAGGAAGCGCTACTAGCACACGTCCGCGAGCACTCGAAGCCCGAAGACGGACACGAGGAGAACAAGTCCTTCTCTAAGAAGCTTGAGAACACGCCGGACCCGGCCGACCTGGCCTACCGCTGCGGGCACTGCAACCAGCTGTCCAACTGGAAGCACGTCATACAGAGACACTGTCGTTTGAAGCATGATGGAGTCATCAAAGTTATTACCACGGTCAAACCGAAACCTGATGCCTCGTCATTGTTGAACGAAATGAACGACACTTGCACCAAATGCCCGTTCAAAGCTGCAGACAGAAAACAACTTCAATTCCACATGCAGCAGCACCAGCCGTCGCCCCAGTCCATATTCAAATGCTACTTCTGTCCGTACTTCGTGAAAACTGAACACGATTTAGTGCAACATCTAGCTTTACATGGTGTTACAGACCCAGAAGAATATATCTCCAAAGCAATGGGATGCAAGTCGCCGCTGCCAGATAATCCTGGAAATTCTAGCGGGTCCACCTCAACCAAACGACACAAGTGCACGGAGTGTCCCTACGAAACCAACAGCAAGTCCCAGTTTATGTATCACGAGCAATTCCACCGGCTCCCAGCTGACACCCCATACAAATGCCAGGAATGCAACTACAGCGTTTCCAAGAGACACCTCCTCCATCAGCACATGAGAGTTCACGGAATCATGCCTAAGAAAACTGAAATGGAATTAGAAATGGAAGCGTCCACGTCCTCTTGCAAGATGGAGATTCCTATCGATTTAAACGAAATTCCTTTTGTGTGGGTTTCGGCTAAAAACGAATTCCACAAAATGTACAAATGCCGCTACTGTTCGTATGTAAATTCCCAAAAGTGCAAAATACCAAATCATGAGAAGATTCATTGTATCGTCTTTGAAAATAGTGAAATTACTATTTACAAATGCTTGGAATGTAAGTTTACTTGCGATAATGCCGGAAGGTTGGCCGAACATTCAAGGACGCACGGAGAAATTTACGGACGCATTTACTGTCCAGTCGAAGCCGATGTTCCCGATGAGGAGCAGATTACTAAATTACGCAAGGTTATAGAAACTGAGAAAATAAATAACCCGGATAGCCCCAGGGACGAGATGCTTTTAAAAGATAATGAAGAACTTAAAATATTGTTCTTCTGTCATAAATGCCCGGCTAGATTTTTCATTGATAGTGATTTGAGGATCCATGACAAATTCCACGATCTGTTGTTTGCGAACAAATGCAAGCTTTGTGAGTTTTCAGTGCCCCAAGAGACTGAATTAAACGTTCATGCGGTCCACCATTCCGATGAGTATGCGACGGAAACTAAAATGCTCAAGTTTAAGCACCGATCTCACCCAGCGCACAAGGAGCCGAAACTGGAAGTTGTACACTGCCCGCTAACTTCAGAACTTAATTGGATAGTTTCGCACCGGACGACTAACTTTGAGATTGTAGATTCTTCGAAAAAATGCAACGAGAATAGAGTGCCTAAGCAATATTTCTGCAAGGAATGTCCGGCTAAATTCTTCAAAACTTCTGCGTTAAGTTATCACACGGGATTGCACGGAGGGGATGGCGACCACAAGTGCAAAAAATGTAGCTACACTGTCAAAAACTTAGGAAATTTGGCCAAGCACGAATCGTTACACGAGAATGAAGGAAAAACCAACACGTGTGATTACGAATCCGGAGAAGACAACGATTACAAAAACATTCCATTATCTGGTACAGATCTATTTCAACGGAAAACTGAAGCGCAGAAAAGAGTTGTAAAAGACAACAACAAGTTAGTGAAACCCAACGACCATTTTCCACCTGTATTACAGGCAGATCCTCAATTCGGGTACTTAATGCACGGTAACCCAGAGTTTATCTATCCTACATACATGAAAAATGGCCGCCAAAAAGAGAAAAGATACAAGTGCCACAAGTGCCCATCTGCTTTTGAGAAAAGAGAACAATACAAAATACATTTATCGCTGCACGGATCCAAACAGAGATACAAGTGCGAAGTTTGTGATTATTCTGTAAAATACTATGCCAACTACGTGCAGCACATGAGGAAACATCAAATGAATGACGAAGCACAGGCTGAGAGAAGAAAAAATAACGAAGAGACCAATGAGGCTGAAAACGAAACACAAGAAGATAAACCAGCAAAAGGAAATATTAAGCTAGCGATTAAAACAATGCCAAAGGGGCCAACAAGGCCAAAAAGTGATTTTCAGCAGTTTTCTGTCAGCGACCAACAGACACTCCGCCTGCTACAACTAAGACGGTCTATAAATAATGCCGAAAAAGAAAAGCAACCGGACCCCACTCCCACAAAGGAACGTAAGCTACACATGTGTCTGTTGTGTCCGTACACGAACCAGCGCCAAGATGCTTTAACAAATCACTATAAGAGACACGAAGATAACCTAAATGCCGCCAATGGCATTCATAAATGTCCACATTGTGACCTAGTCGTCGTCCAATCACACTTTCTGCGGGAACACCTCAAGACTCATTTTAATTATCAAAAGCATTTGACCCCTGAATGCTATGCAGCTAGTGAAGGTGTGACTTTTGTCATAAAACAACTCGATGATGAAGATGAAGAAGATACAAAAGATGAAAACAAGAGTGAAAATTTAAATGAAGATATCACTGATGTTGAAGTCAAAGAAGAAAAGGATCATTTAATCGATGCCAAGAAAGCAGCAGAGAACAAAATATGTAATCTGAAAGATATCATTAAAAATGGACAGAAAAATGCTCCAAAATTAAATTTACAAATTGCGGTGAAAGAAGAGACTTCTACTGATCTAGTTATTACTTTAGATGAAAAAATTACTTTCGACTCAAATGATAATAAGATATTTGTCAAACTTAAAACAGGGGAGCTTATTGTAGAGTAA
Protein Sequence
MVTCTSDNETSTETAAKKDIELAQDTQHRHSPNSTMGEGKTNKQSRKIPRPIPQLIPLNTSTPNQNKSPPGEPPLKKFKEDPSRDINAVDNVDNLPADITIIPVTNGTPLTTKETAVKKKNESFFDRLKERLLTATGEEGTLTCKNCGFESKCLSEHSVHEKNCTAVSANKVLANNTHTSLGSTRCQNCRHRCKSSADLYVHMQTCGKVEKAENEQSNDSENKHVTTSTAHEADFVKDEPHPMENVVFVWNNINPDTAKFETPLDININDDSTMPESNKNYDSEIVDENEGMNLSPSQAAGKKVFKCPHCTFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAVPVVNEYGETEFDYIDPNALANGSMELDESFNETNDNINTTLEMQPLNLQTLHGQHSIETIDIKNEDLKPKKTMWKCKKCNYKDPSKEALLAHVREHSKPEDGHEENKSFSKKLENTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDASSLLNEMNDTCTKCPFKAADRKQLQFHMQQHQPSPQSIFKCYFCPYFVKTEHDLVQHLALHGVTDPEEYISKAMGCKSPLPDNPGNSSGSTSTKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCQECNYSVSKRHLLHQHMRVHGIMPKKTEMELEMEASTSSCKMEIPIDLNEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIVFENSEITIYKCLECKFTCDNAGRLAEHSRTHGEIYGRIYCPVEADVPDEEQITKLRKVIETEKINNPDSPRDEMLLKDNEELKILFFCHKCPARFFIDSDLRIHDKFHDLLFANKCKLCEFSVPQETELNVHAVHHSDEYATETKMLKFKHRSHPAHKEPKLEVVHCPLTSELNWIVSHRTTNFEIVDSSKKCNENRVPKQYFCKECPAKFFKTSALSYHTGLHGGDGDHKCKKCSYTVKNLGNLAKHESLHENEGKTNTCDYESGEDNDYKNIPLSGTDLFQRKTEAQKRVVKDNNKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYMKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCEVCDYSVKYYANYVQHMRKHQMNDEAQAERRKNNEETNEAENETQEDKPAKGNIKLAIKTMPKGPTRPKSDFQQFSVSDQQTLRLLQLRRSINNAEKEKQPDPTPTKERKLHMCLLCPYTNQRQDALTNHYKRHEDNLNAANGIHKCPHCDLVVVQSHFLREHLKTHFNYQKHLTPECYAASEGVTFVIKQLDDEDEEDTKDENKSENLNEDITDVEVKEEKDHLIDAKKAAENKICNLKDIIKNGQKNAPKLNLQIAVKEETSTDLVITLDEKITFDSNDNKIFVKLKTGELIVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00150040;
90% Identity
iTF_01134374;
80% Identity
-