Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387687.1:15394038-15406092[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.5 90 4.4 0.0 2 23 117 138 116 138 0.95

2 17 0.031 1.9 9.7 0.1 2 23 142 164 141 164 0.88

3 17 0.4 25 6.2 0.9 2 23 402 424 401 424 0.96

4 17 0.029 1.8 9.8 0.1 1 20 432 451 432 453 0.94

5 17 0.0026 0.16 13.1 0.6 2 23 463 484 462 484 0.95

6 17 8.5 5.2e+02 2.0 0.7 1 10 500 509 500 523 0.71

7 17 0.0013 0.082 14.0 2.8 1 23 532 555 532 555 0.95

8 17 0.023 1.5 10.1 0.1 2 23 631 653 631 653 0.94

9 17 9.8e-05 0.006 17.6 1.1 1 23 687 709 687 709 0.97

10 17 2.6e-05 0.0016 19.3 1.7 1 23 716 738 716 738 0.98

11 17 0.00012 0.0073 17.3 2.3 1 23 743 765 743 765 0.96

12 17 0.0057 0.35 12.0 4.1 1 23 771 793 771 793 0.97

13 17 4.2e-05 0.0026 18.7 1.1 1 23 799 821 799 821 0.94

14 17 0.00043 0.026 15.5 2.6 2 23 828 849 828 849 0.98

15 17 0.00053 0.033 15.2 0.7 2 23 858 880 857 880 0.97

16 17 0.0021 0.13 13.3 0.2 1 23 885 907 885 907 0.97

17 17 0.12 7.5 7.8 3.9 1 23 913 936 913 936 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.5	90	4.4	0.0	2	23	117	138	116	138	0.95
2	17	0.031	1.9	9.7	0.1	2	23	142	164	141	164	0.88
3	17	0.4	25	6.2	0.9	2	23	402	424	401	424	0.96
4	17	0.029	1.8	9.8	0.1	1	20	432	451	432	453	0.94
5	17	0.0026	0.16	13.1	0.6	2	23	463	484	462	484	0.95
6	17	8.5	5.2e+02	2.0	0.7	1	10	500	509	500	523	0.71
7	17	0.0013	0.082	14.0	2.8	1	23	532	555	532	555	0.95
8	17	0.023	1.5	10.1	0.1	2	23	631	653	631	653	0.94
9	17	9.8e-05	0.006	17.6	1.1	1	23	687	709	687	709	0.97
10	17	2.6e-05	0.0016	19.3	1.7	1	23	716	738	716	738	0.98
11	17	0.00012	0.0073	17.3	2.3	1	23	743	765	743	765	0.96
12	17	0.0057	0.35	12.0	4.1	1	23	771	793	771	793	0.97
13	17	4.2e-05	0.0026	18.7	1.1	1	23	799	821	799	821	0.94
14	17	0.00043	0.026	15.5	2.6	2	23	828	849	828	849	0.98
15	17	0.00053	0.033	15.2	0.7	2	23	858	880	857	880	0.97
16	17	0.0021	0.13	13.3	0.2	1	23	885	907	885	907	0.97
17	17	0.12	7.5	7.8	3.9	1	23	913	936	913	936	0.97

Sequence Information

Coding Sequence: ATGGCTTCAGACGAGTCCGATGATGAGCCACTTGCCAGTATAGCGGCTGCAAAAAAGCTAAATCCGGAGAAATATTCCGAAGTTACGATTGAACTTTGCAAGGATGAACCGGCCCAGAAAAAGAAGAAGAAAACCTTTCCTCAAAAGAAAATGAATGCCATGACGATAAAGATCAACCGTGCTTTAAAGGCTGTGATCACCCCACCGGTCGTGGAAAGGCCTATCGATGTCTGGCTATATTTAAAAGACCTCAATCCGACCGGACCATACAGTTGTTTGCTTTGCCCGGATTGGTTTATCAATAGGGGAAAAATGATTTTACACTACGTATTGAATCATAAAAAAGACTATTGTGGCATATGCAGATATTTTGTACCAGACAGAGAAGCTTGGCTGGCCCACCTTAAGTTCCATGTGCCCTGGCCCTGCTCCCAGTGCGTCAAGAACTTTGACACTGAAGCCGAGCTCCGTCAGCACTTCAGTGCGGAACACAATCTCGTGCACTGCCGACTGTGCCATTTCCGAGTACCTGACGATGACCAGTACAATACACACTTGATACAGAAGCACAGTGTCTCAAACTTGTCTTGTAAAGATGAGGACACACTTTGGGAATTTGAGTATGAAGGCAGTAACAAATTCCTTTGCTTACTGTGCTCAAAATCAAATAATCTATGCACAATGTTCTTTAATCATTACATGGGCTATCATCATTACACTCTCAAATGTCTAAGCAGCATACTCTCTGGTAGAGATTTACCTTTTGTTATTAGCGGTGCTGATGTTAGTCCACAGTTCATTGATGACCAACTTAAAGATCAGAGCAGAGTTGGATATGTGGATTTACAGAAAAATACTGATGAAAACATAAATGAAGATCATAGTGACAATGAATCAGAAGATCTACTTAAAGTGCTCATACCAGAGATAAAACAGGAAGCCATTAGTGAAGCAGAAGAAACAGAAACACCTAGTGAAGAAAAGCCTAAAGAAAAGATAAAGAAAGTCAGAGATGAGAATGATATTGCAAATATTTATAAAGGTGACGAAGACTTTGACATTACATTAACAGAGCTAATAATCTTACAAAAATGCTACTTTGAATATGTAAACCGAACTTTAAATGACATAAACTCCAATTTGGTTCCTGAAGTTTCCGACATAGACTATGCAACAGCAAAACCTGATCTTGCGACTGATATAACTTGCACTCTTTGTAAAAATAAGTATGATAATATGCAGGCTTTTATGACTCACATGATTAAAAATCATTTTATGAAAGTAGCACCAATTTTTTCATGTAGGGTGTGCACAGCTACGTTTGAAAGTCAGAGTGAGTTGGACAGTCATGTGACTGAGGAGCTAGGTGATTTTGAGGATCTGTGGATCTGTCAGTTTTGTGATAAAGAATTTGACAATAGAGAAGATACAAGGAAACATCTAAATGAACACTGGGAGGTTATGGAGTTTGACAACTGTTTTAGTCCGCATTTGGGCTTTAAATGCAAGTATTGTTCGACACTGTTCTGGAATGAGACTGATAGAGAGACGCATGAAGTGCGCACACATTTCAGTCAGTATACGGAGCAGTTTTACAAATGCGAGGATTGCTCGGAAACATTCAGTGATAAGGTTTTCTACATCCACCACTACATGGAAAAGCACCGCAGCTCCGATTCCCCCACATACATGCTAAAGTGCAGTGTGTGCTGCATCGTCCGTCCCAGCATTGAAGAGATGCGAACACATTTTGAAGTCAAACATCCAGAGGCCAGGAAAATCTTCTGTTCATTAGATTCTTGTCAGTATCGCCCACTCAGCCATAGAAAGTCGTTTAAATTTCATTTGAGGTCTGTCCACGACCCCACAGTGCGGCCGCAGCGCCCCGCCACCTGCACCATTTGCGAGCGCGACTTCGTTAGCACTCGCGCCCTCGGCGCCCATATGGCGCAGGTCCATGGCCCGGGCAAATTCAAGTGTAAACTATGTAGGGAGGTCATGCATACGCTGGATGAGAGAAAACTACACTACCTGATCCGTCATCCCGGCCGTCATCCATTCGAATGCGCAGAATGTGGCAAATCGTTCCAATACAAGTCATCTCTATACATGCACAAGCAAGAACATTCCCCCATCAAGCAAAGCTTTACTTGCACCTACTGCTCTAAAGTGTTCGCGAAACGTGATTCCTTCCGCGAGCACCTCCAGATCCACGAAGGCCCCCGCCACGCCTGCTCCTACTGCCCCATGCGTTTCGTACAACGTTCGAACATGCTCCGTCACGAGCGGAGACATACAGGGGAGAGACCGTACGCCTGCCAACATTGTCCGAGGACGTTCTCTGATAAGGGGGCTTGTAACTCACACTCTAGGACACATTCCAAGGATACGTCATACGCTTGCATCTATTGCGGACAGACGTTCGTTCAGAAATCAAAGCTCACCTATCACATAAGGAAACACACTGGAGAAAACTTGGAAACTTGTACGATCTGTTCGAAACTGTTCACTAGCGCTTGTTCCTTACGCGAGCACATGAAAATCCATGAAGCTAAGAAGAAAGGAGCGGTTCAGTGTCCTCTCTGTGAAAGGAAATACAAAGATGAGCGTTACATGCTACGTCACCTCCGCACTTCGCATACTAGTACTTCATTCCCTTGCCCGCTCTGTGACAAGAACTTGACCAGCATGGCCGGTTTGCGGCACCACGTGGTCACACACAGTGGCCTTAATACTTTTCGGTGTAAATGCTGTCCAAAATCCTACGCCGTAAAGCGTTCAGTCGTCAAGCACCTACGAAAACGCCACGGTTTGAAAGGCACAGAAATAAACATTAAAGACTACTTCAAACGCATAGACCCACGTGACTGCGATCTAGGCCTAGACGACGAAGCTATGACCAAAATATTCGGACCACCTAAGAAAACTATGAATGATATTCTAATGGGCGATTTTGTTACACTCACTGATAAATTAACTGGTAATCAGAATACGAATAACGATGATGATGATAATGATGACACGAATGATGAAGATGATAATGATGGTAAAGATTCTGATGAGAATGAAAATGAAAATGTGATGGAAGAAATAAGTACAGTGATTATAAAAACTGAGAAGAAAGAAACAGATGAATTGGAGCCAACTAATTTTGTTAGCGTTAAGATTGAGCCAATGGATGAAGAAGGATCAGAATAA
Protein Sequence: MASDESDDEPLASIAAAKKLNPEKYSEVTIELCKDEPAQKKKKKTFPQKKMNAMTIKINRALKAVITPPVVERPIDVWLYLKDLNPTGPYSCLLCPDWFINRGKMILHYVLNHKKDYCGICRYFVPDREAWLAHLKFHVPWPCSQCVKNFDTEAELRQHFSAEHNLVHCRLCHFRVPDDDQYNTHLIQKHSVSNLSCKDEDTLWEFEYEGSNKFLCLLCSKSNNLCTMFFNHYMGYHHYTLKCLSSILSGRDLPFVISGADVSPQFIDDQLKDQSRVGYVDLQKNTDENINEDHSDNESEDLLKVLIPEIKQEAISEAEETETPSEEKPKEKIKKVRDENDIANIYKGDEDFDITLTELIILQKCYFEYVNRTLNDINSNLVPEVSDIDYATAKPDLATDITCTLCKNKYDNMQAFMTHMIKNHFMKVAPIFSCRVCTATFESQSELDSHVTEELGDFEDLWICQFCDKEFDNREDTRKHLNEHWEVMEFDNCFSPHLGFKCKYCSTLFWNETDRETHEVRTHFSQYTEQFYKCEDCSETFSDKVFYIHHYMEKHRSSDSPTYMLKCSVCCIVRPSIEEMRTHFEVKHPEARKIFCSLDSCQYRPLSHRKSFKFHLRSVHDPTVRPQRPATCTICERDFVSTRALGAHMAQVHGPGKFKCKLCREVMHTLDERKLHYLIRHPGRHPFECAECGKSFQYKSSLYMHKQEHSPIKQSFTCTYCSKVFAKRDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACQHCPRTFSDKGACNSHSRTHSKDTSYACIYCGQTFVQKSKLTYHIRKHTGENLETCTICSKLFTSACSLREHMKIHEAKKKGAVQCPLCERKYKDERYMLRHLRTSHTSTSFPCPLCDKNLTSMAGLRHHVVTHSGLNTFRCKCCPKSYAVKRSVVKHLRKRHGLKGTEINIKDYFKRIDPRDCDLGLDDEAMTKIFGPPKKTMNDILMGDFVTLTDKLTGNQNTNNDDDDNDDTNDEDDNDGKDSDENENENVMEEISTVIIKTEKKETDELEPTNFVSVKIEPMDEEGSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00411840;
90% Identity: iTF_00410668; iTF_00409588; iTF_00411840; iTF_01134099; iTF_00871640;
80% Identity: -