Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421912.1:19574723-19583761[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.1 2.7e+02 3.6 0.2 2 23 117 138 116 138 0.95

2 16 0.017 1.5 10.7 0.1 2 23 142 164 141 164 0.92

3 16 0.37 33 6.5 1.4 3 23 401 422 399 422 0.95

4 16 0.003 0.27 13.1 0.1 1 20 430 449 430 451 0.95

5 16 0.11 9.5 8.2 1.0 3 23 462 482 461 482 0.96

6 16 0.0037 0.33 12.8 4.7 1 23 530 553 530 554 0.95

7 16 0.019 1.7 10.6 0.0 2 23 629 651 629 651 0.94

8 16 5.7e-05 0.005 18.5 1.8 1 23 685 707 685 707 0.97

9 16 2.1e-05 0.0019 19.8 1.6 1 23 714 736 714 736 0.98

10 16 0.00013 0.012 17.3 2.3 1 23 741 763 741 763 0.96

11 16 0.0096 0.84 11.5 3.2 1 23 769 791 769 791 0.97

12 16 6.1e-05 0.0054 18.4 1.2 1 23 797 819 797 819 0.93

13 16 0.00053 0.046 15.5 2.5 2 23 826 847 826 847 0.98

14 16 0.0045 0.4 12.5 0.6 2 23 856 878 855 878 0.97

15 16 0.003 0.26 13.1 0.9 1 23 883 905 883 905 0.97

16 16 0.14 12 7.8 3.9 1 23 911 934 911 934 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.1	2.7e+02	3.6	0.2	2	23	117	138	116	138	0.95
2	16	0.017	1.5	10.7	0.1	2	23	142	164	141	164	0.92
3	16	0.37	33	6.5	1.4	3	23	401	422	399	422	0.95
4	16	0.003	0.27	13.1	0.1	1	20	430	449	430	451	0.95
5	16	0.11	9.5	8.2	1.0	3	23	462	482	461	482	0.96
6	16	0.0037	0.33	12.8	4.7	1	23	530	553	530	554	0.95
7	16	0.019	1.7	10.6	0.0	2	23	629	651	629	651	0.94
8	16	5.7e-05	0.005	18.5	1.8	1	23	685	707	685	707	0.97
9	16	2.1e-05	0.0019	19.8	1.6	1	23	714	736	714	736	0.98
10	16	0.00013	0.012	17.3	2.3	1	23	741	763	741	763	0.96
11	16	0.0096	0.84	11.5	3.2	1	23	769	791	769	791	0.97
12	16	6.1e-05	0.0054	18.4	1.2	1	23	797	819	797	819	0.93
13	16	0.00053	0.046	15.5	2.5	2	23	826	847	826	847	0.98
14	16	0.0045	0.4	12.5	0.6	2	23	856	878	855	878	0.97
15	16	0.003	0.26	13.1	0.9	1	23	883	905	883	905	0.97
16	16	0.14	12	7.8	3.9	1	23	911	934	911	934	0.97

Sequence Information

Coding Sequence: ATGTCTTCAGACGAATCTGATGATGAACCACTCGCTATTATAGCGGCCGCGAAAAAGCTGAATCCGGACCAATACTCTGAAGTTACAATCGAACTGTGTAAAGATGAACCGGccaagaaaaagaagaagaaaaccATGCCACAGAAGAAAATGAATGCTATGACGATTAAAATCAACCGTGCTTTGAAGGCTGTGATTACTCCACCGGTTGTGGAGAGACCTATGGACGTTTGGCTGTATTTAAAAGACCTCAACCCGACTGGACCGTACAGTTGTTTGTTATGCTCGGATTGGTTTATCAACAGGGGGAAAATGATCTTACATTATGTCCTGAACCACAAGAAAGATTATTGTGGCATATGCAGATATTTCGTACCAGACAGAGAAGCCTGGCACGTCCACCTCAATTTCCATGTGCCCTGGCCCTGCTCTCAGTGTGTCAAGAATTTTGACACTGAAGCTGAGCTACGTCAGCACTTCAGTGTGGAACACAAACTGGTGCATTGCCGACTCTGCCATTTCCGACTGTCTGATGATGACCAGTACAACACACACTTGATACAGAAGCACAGTGTCTCAAACTTGTCTTGTAAAGATGATGACATACTTTGGGAATTTGAATATGAAGGCAGCAACAAATTCCTTTGTATACTTTGCTCAAAATCAAACAATCTATGCACAATGTTCTTTAATCATTACATGGGATATCATCATTATACTCTCAAATGCTTAAGCAGCATACTCTCTGGCAGGGACCTACCTTTTGTCATCAGCGGTGCCGATGTTAGTCCACAGTTCATTGATGACCAACTTAAAGACCAAACTAGAGTTGGATATGTGGATTTGCAGAAAAAGCCTGACCAATACACTAATGAAGATACTGATAACGAGTCAGAGGATCTACTCAAAGTGCTGATACCAGAAATTAAGCAGGAAGCCATGAGCGAGGCAGAGGATGCACCTACTGAAGAAAAACCTAAAGAAAAAACACAGAAAGTCAGAGACGAGAATGATATTGCAAATGTCTATAAAGGAGATGAAGATTTCGATGTCACATTAACAGAATTAATAATCCTACAAAAATGCTATTTTGATTATGTAAACCAAACTTTAAATGACATAAACTCCAATATGGTTCCTGAGGTTTCCGATATAGACTATGCAACAGTAAAACCAGATCGTCTGGTAACTGATATAAATTGTACCCTttgtaaaaataagtataaCAACATGAAGGCGTTTATGTTACACATGatgaaaaatcattttatgaaGGTAGCACCAATTTTTTCATGTAGAGTGTGCACAGCTACGTTTGAGAACCAGAGTGAGTTGGAGAACCATGTGACCGAAGAGTTAGGTGACTTTGAGGATCTCTGGCTCTGTCAGTTTTGTGAGAAAGAATTTGATAGCCGAGAAGAGACACGGAAGCATTTAACTGAACATTGGGAGGGGATGGAGTTTGACAACTGTTTTAGTCCGCATTTGGGCTTTAAATGCAAGTATTGTTCAAATCTGTTCTGGAATGAGACTGACAGAGAGACACATGAAGTGCGCTCACATTTCAGTCAGTATACAGATCAGTTTTACAAATGTGAAGATTGTTCAGAAACATTTAGTGACAAGGTGTTCTTCATCCACCACTACATGGAAAAGCACCATACCGAAGACTCCCCCACCTACATGCTGAAGTGCAGCATCTGCTGCATCGTCCGTCCCAGCATTGAAGACATGCGGACACACTTTGAGAGCAAACATCCGGAGGCGAGGAAAATCTTCTGTTCATTGGATTCTTGTCAGTATCGTCCGCTGAGCCATAGGAAGTCTTTTAAATTCCATTTAAGGTCGGTCCACGATCCCACAGCGCGGCCGCAGCGGCCGGCCACTTGCACCGTGTGCGAGCGCGACTTCGTCAGCGCGCGGGCCCTGGGGGCCCACATGGCGCAGGTGCATGGCCCTGGCAAGTTCAAGTGTAAACTGTGCCGTGAAATCATGCATACGTTGGACGAGAGAAAACTCCACTACCTGATCCGGCACCCAGGACGCCACCCGTTCGAGTGTTCAGAGTGTGGGAAGTCGTTCCAATACAAGTCTTCACTGTACATGCACAAGCAAGAACACTCGCCCAATAAGCAGAGCTACACGTGTACCTATTGCTCTAAAGTTTTTGCGAAACGCGACTCTTTCCGCGAGCACCTCCAAATCCACGAAGGCCCGCGCCACGCCTGCTCCTACTGCCCCATGCGGTTCGTGCAACGGTCCAACATGCTTCGCCATGAACGGAGGCACACTGGCGAGCGTCCGTATGCTTGCCAGCACTGTCCGCGTACTTTTGCGGACAAGGGGGCCTGCAATTCCCATTCTAGAACACATTCCAAAGAAACATCGTTCGCTTGCATCTACTGTGGGCAGACGTTCGTCCAGAAATCTAAGCTCACGTATCACATAAGGAAACATACTGGAGAAAACTTGGAGACATGCAGCATCTGTTCGAAACTGTTCACCAGCGCTTGCTCCCTGCGCGAGCACATGAAGATACACGAAGCCAAGAAGAAAGGCGCGGTGCAGTGTCCTCTGTGTGaaaGGAAATACCAAGATGAGCGGTACATGCTACGTCACCTACGAACTTCACATACAAGCACGTCCTTCCCTTGTCCGCTGTGTGACAAGCACTTAACTAGCATGGCAGGCCTGCGGCACCACGTGGTCACTCACGGGGGCCTCAATACTTTCCGGTGCAAATGCTGCCCAAAGAGCTACGCCGTAAAGCGCTCAGTCGTCAAGCACCTACGAAAACGGCACGGCCTGAAAGGCGCCGACATCAACATCAAAGACTACTTTAAACGCATCGACCCCCGCGACTGCAACCTCGGGCTCGATGACGAAGCTATGACCAAAATATTTGGACCACCAAAGAAAACCATGAACGACGTACTCATGGGCGATTTCGTCACACTCACTGATAAACTAACGGGCAATAACGACGAGGGTGATGATACGAATGACGAAGATGATGGTAATGATTCTGGTGATGAAAATGTGACGGAAGAAATAAGTACAGTGATCATTAAAACTGAGAAGAAGGATGGGGATGAATTGGAGCCTACTAACTTTGTTAGTGTCAAAATTGAACCGTTAGATGAAGATTCGCAGTAG
Protein Sequence: MSSDESDDEPLAIIAAAKKLNPDQYSEVTIELCKDEPAKKKKKKTMPQKKMNAMTIKINRALKAVITPPVVERPMDVWLYLKDLNPTGPYSCLLCSDWFINRGKMILHYVLNHKKDYCGICRYFVPDREAWHVHLNFHVPWPCSQCVKNFDTEAELRQHFSVEHKLVHCRLCHFRLSDDDQYNTHLIQKHSVSNLSCKDDDILWEFEYEGSNKFLCILCSKSNNLCTMFFNHYMGYHHYTLKCLSSILSGRDLPFVISGADVSPQFIDDQLKDQTRVGYVDLQKKPDQYTNEDTDNESEDLLKVLIPEIKQEAMSEAEDAPTEEKPKEKTQKVRDENDIANVYKGDEDFDVTLTELIILQKCYFDYVNQTLNDINSNMVPEVSDIDYATVKPDRLVTDINCTLCKNKYNNMKAFMLHMMKNHFMKVAPIFSCRVCTATFENQSELENHVTEELGDFEDLWLCQFCEKEFDSREETRKHLTEHWEGMEFDNCFSPHLGFKCKYCSNLFWNETDRETHEVRSHFSQYTDQFYKCEDCSETFSDKVFFIHHYMEKHHTEDSPTYMLKCSICCIVRPSIEDMRTHFESKHPEARKIFCSLDSCQYRPLSHRKSFKFHLRSVHDPTARPQRPATCTVCERDFVSARALGAHMAQVHGPGKFKCKLCREIMHTLDERKLHYLIRHPGRHPFECSECGKSFQYKSSLYMHKQEHSPNKQSYTCTYCSKVFAKRDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACQHCPRTFADKGACNSHSRTHSKETSFACIYCGQTFVQKSKLTYHIRKHTGENLETCSICSKLFTSACSLREHMKIHEAKKKGAVQCPLCERKYQDERYMLRHLRTSHTSTSFPCPLCDKHLTSMAGLRHHVVTHGGLNTFRCKCCPKSYAVKRSVVKHLRKRHGLKGADINIKDYFKRIDPRDCNLGLDDEAMTKIFGPPKKTMNDVLMGDFVTLTDKLTGNNDEGDDTNDEDDGNDSGDENVTEEISTVIIKTEKKDGDELEPTNFVSVKIEPLDEDSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00411840;
90% Identity: iTF_00412819;
80% Identity: -