Basic Information

Insect: Pammene aurita
Gene Symbol: -
Assembly: GCA_947086415.1
Location: OX352300.1:5552878-5572562[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.4 1.6e+02 4.5 0.2 2 23 117 138 116 138 0.95

2 16 0.031 3.5 9.7 0.1 2 23 142 164 141 164 0.88

3 16 0.9 1e+02 5.1 0.8 3 23 402 423 400 423 0.95

4 16 0.015 1.7 10.7 0.1 1 20 431 450 431 452 0.94

5 16 0.088 9.8 8.3 1.1 3 23 463 483 462 483 0.95

6 16 0.014 1.6 10.7 4.4 1 23 531 554 531 555 0.95

7 16 0.043 4.8 9.2 0.1 2 23 630 652 630 652 0.94

8 16 0.00013 0.015 17.1 1.3 1 23 686 708 686 708 0.97

9 16 1.9e-05 0.0021 19.8 1.6 1 23 715 737 715 737 0.98

10 16 0.00012 0.013 17.3 2.3 1 23 742 764 742 764 0.96

11 16 0.0085 0.95 11.5 3.3 1 23 770 792 770 792 0.97

12 16 4.3e-05 0.0048 18.7 1.1 1 23 798 820 798 820 0.94

13 16 0.00043 0.048 15.5 2.6 2 23 827 848 827 848 0.98

14 16 0.004 0.44 12.5 0.6 2 23 857 879 856 879 0.97

15 16 0.0022 0.24 13.3 0.2 1 23 884 906 884 906 0.97

16 16 0.12 14 7.8 3.9 1 23 912 935 912 935 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.4	1.6e+02	4.5	0.2	2	23	117	138	116	138	0.95
2	16	0.031	3.5	9.7	0.1	2	23	142	164	141	164	0.88
3	16	0.9	1e+02	5.1	0.8	3	23	402	423	400	423	0.95
4	16	0.015	1.7	10.7	0.1	1	20	431	450	431	452	0.94
5	16	0.088	9.8	8.3	1.1	3	23	463	483	462	483	0.95
6	16	0.014	1.6	10.7	4.4	1	23	531	554	531	555	0.95
7	16	0.043	4.8	9.2	0.1	2	23	630	652	630	652	0.94
8	16	0.00013	0.015	17.1	1.3	1	23	686	708	686	708	0.97
9	16	1.9e-05	0.0021	19.8	1.6	1	23	715	737	715	737	0.98
10	16	0.00012	0.013	17.3	2.3	1	23	742	764	742	764	0.96
11	16	0.0085	0.95	11.5	3.3	1	23	770	792	770	792	0.97
12	16	4.3e-05	0.0048	18.7	1.1	1	23	798	820	798	820	0.94
13	16	0.00043	0.048	15.5	2.6	2	23	827	848	827	848	0.98
14	16	0.004	0.44	12.5	0.6	2	23	857	879	856	879	0.97
15	16	0.0022	0.24	13.3	0.2	1	23	884	906	884	906	0.97
16	16	0.12	14	7.8	3.9	1	23	912	935	912	935	0.97

Sequence Information

Coding Sequence: ATGGCTTCAGACGAGTCTGATGATGAACCGCTCGCCATTATAGCGGCTGCAAAAAAGCTGAATCCGGAGAAATACTCTGAAATTACAATTGGACTTTGTAAAGATGAACTGGCCAAGAAAAAGAAGAAGAAAATCATTCCTCAAAGGAAAATGAATGCCATGACGATTAAGATCAACCGTGCCTTGAAGGCGGTTATCACCCCACCGGTCGTGGAGAGGCCTATGGACGTCTGGCTATATTTAAAAGATCTCAACCCAACAGGGCCATATAGTTGTTTGCTTTGCTCTGACTGGTTTATCAACAGGGGCAAAATGATTTTACACTATGTGCTGAATCACAAGAAAGACTATTGCGGCATATGCAGATATTTTGTACCAGACAGAGAAGCTTGGCATGCTCACCTTAAATTCCACGTGCCCTGGCCGTGCTCGCAATGTGTCAAGAACTTCGAAACGGAAGCTGAGCTCCGACAACACTTCAGTGCGGAACATAACCTGGTCCACTGCCGACTATGCCATTTCAGAGTACCTGATGATGACCAGTACAATACACACTTGATACAGAAGCACAGCGTCTCGAACTTGTCTTGTAAAGATGATGATACACTTTGGGAATTTGAATATGAAGGCAGTACTAAATTCCTTTGCTTACTTTGCTCAAAATCTAATAATCTATGCACAATGTTCTTTAACCATTACATGGGCTACCACCACTACACTCTTAAATGCCTAAGCAGCATACTCTCCGGTAGAGATCTACCGTTTGTCATCAGCGGAGCCGATGTCAGTCCGCAGTTCATTGATGACCAACTTAAAGACCAAAGTAGAGTTGGTTATGTAGACCTTCAGAAAAAACCTGATGAGTACACTGAAGATCATAGCGACAATGAGTCGGAGGATCTACTAAAAGTCCTGATACCGGAAATAAAGCAGGAGGCCATGAGTGACACCGAAGACGTACCCGTAAGTGAGGAAAAACCTAAAGAAAAAATAAAGAAAGTCAGAGATGAGAATGACATTGCAAACGTCTATAAAGGTGATGAAGACTTTGACGTCACTTTGACAGAGTTAATAGTCCTACAAAAATGCTACTTCGACTATGTAAACCGGACTTTAAATGACATAAACTCCAACTTGGTTCCTGAAGTATCTGACATAGACTATGCGACAGTAAAACCTGATGATCCCACGACTGAAATAAACTGCTCTCTATGTAAAAATAAGTATGATAATATGCAGGCATTTATGTCACACATGATTAAAAACCATTTTATGAAGGTAGCTCAAATTTTCTCATGCAGAGTGTGTACTGCTACGTTTGAAAACCAGAGTGAATTAGATAACCATGTGACAGAAGAACTAGGCGAGTTTGAGGATCTCTGGCTCTGTCAGTTTTGTGAGAAAGAGTTTGAGAACAGAGAAGATACGAGGAAACATCTGACTGATCACTGGGAGGTGATGGACTTTGACAACTGTTTTAGTCCACATTTGGGCTTCAAGTGCAAGTACTGTTCGAATTTGTTCTGGAATGAGACGGATAGGGAAACTCATGAAGTTCGCACGCATTTCAATCAGTATATGGATCAATTTTACAAATGTGAAGATTGCTTGGAGACATTTAGTGACAAGGTTTTCTTCATTCACCACTACATGGAAAAGCACCACACCCCCGACTCCCCCACATTCATGCTAAAATGCAGTGTGTGCTGTATCGTCCGTCCTGGCATCGAAGACATGAGAACACACTTTGAAAGCAAACACCCGGATGCCAGGAAGATCTTCTGTTCCTTGGATGCGTGTCAGTACCGTCCGCTGAGTCATAGGAAGTCATTTAAATTTCATTTAAGGTCGGTCCACGATCCCACAGCGCGACCGCAACGTCCCGCAACCTGCACCGTTTGCGAGCGCGACTTCGTCAGCACGCGCGCTCTCGGAGCCCACATGGCACAAGTACATGGCCCCGGGAAGTTCAAGTGTAAACTGTGTAGGGAAGTAATGCATACACTAGATGAGAGAAAACTCCACTATCTGATCCGGCACCCAGGGCGCCATCCGTTCGAGTGCGTCGAGTGCGGGAAGTCCTTCCAGTACAAGTCTTCGCTATACATGCACAAGCAGGAACACTCGCCCAATAAGCAGAGCTACACGTGCACCTACTGTTCTAAAGTTTTTGCGAAACGCGACTCCTTCCGCGAGCACCTCCAAATCCACGAAGGCCCTCGTCACGCCTGCTCCTACTGTCCAATGCGGTTTGTTCAACGTTCCAACATGCTTCGCCATGAACGAAGACATACGGGAGAGAGGCCGTATGCATGTCAACATTGCCCACGCACATTTGCCGATAAAGGGGCCTGTACTTCACACTCTAGAACACATTCCAAAGATACATCGTACGCTTGCATCTACTGCGGACAGACGTTCGTGCAGAAGTCGAAGCTCACCTATCACATAAGGAAACATACTGGAGAAAACTTGGAAACTTGCACGATCTGTTCGAAGCTGTTCACTAGTGCTTGTTCTCTGCGTGAGCACATGAAAATACACGAAGCTAAGAAGAAAGGAGCGGTTCAGTGTCCTCTATGTGAGAGAAAGTACCAAGATGAACGCTACATGCTACGTCATCTCCGCACCTCACATACTAGCACATCGTTCCCTTGTCCACTGTGTGACAAGAACCTAACGAGCATGGCCGGTCTACGGCACCACGTGGTCACCCACGGCGGTGTTAATACTTTCAGGTGTAAATGCTGCCCAAAATCCTACGCCGTGAAGCGTTCAGTCGTGAAACATCTTAGAAAACGTCACGGCCTGAAAGGGACAGAAATAAACATTAAAGACTACTTCAAACGTATCGACCCTCGAGACTGTGACCTTGGTCTAGACGATGAGGCTATGACCAAGATATTCGGACCTCCAAAGAAAACCATGAATGACATACTAATGGGAGATTTTGTCACGCTCACTGATAAGTTAACTGGTCAGAATGATAGGAACAATGATGATGAGAATGATGGTAATGATGATTCGAATGATGAAGATGATAATACGAATGGTAAAGAAGATTCTGATGATGAAAACGCAAATGTGACGGAAGAAATAAGTACAGTGATAATTAAAACTGAGAAGAAAGATGAAGTTGACAATGATGAAATGGAGCCGACTGATTTTGTTAGCATTAAGATTGAGCCGATGGATGAAGAAGCTTCACTATAG
Protein Sequence: MASDESDDEPLAIIAAAKKLNPEKYSEITIGLCKDELAKKKKKKIIPQRKMNAMTIKINRALKAVITPPVVERPMDVWLYLKDLNPTGPYSCLLCSDWFINRGKMILHYVLNHKKDYCGICRYFVPDREAWHAHLKFHVPWPCSQCVKNFETEAELRQHFSAEHNLVHCRLCHFRVPDDDQYNTHLIQKHSVSNLSCKDDDTLWEFEYEGSTKFLCLLCSKSNNLCTMFFNHYMGYHHYTLKCLSSILSGRDLPFVISGADVSPQFIDDQLKDQSRVGYVDLQKKPDEYTEDHSDNESEDLLKVLIPEIKQEAMSDTEDVPVSEEKPKEKIKKVRDENDIANVYKGDEDFDVTLTELIVLQKCYFDYVNRTLNDINSNLVPEVSDIDYATVKPDDPTTEINCSLCKNKYDNMQAFMSHMIKNHFMKVAQIFSCRVCTATFENQSELDNHVTEELGEFEDLWLCQFCEKEFENREDTRKHLTDHWEVMDFDNCFSPHLGFKCKYCSNLFWNETDRETHEVRTHFNQYMDQFYKCEDCLETFSDKVFFIHHYMEKHHTPDSPTFMLKCSVCCIVRPGIEDMRTHFESKHPDARKIFCSLDACQYRPLSHRKSFKFHLRSVHDPTARPQRPATCTVCERDFVSTRALGAHMAQVHGPGKFKCKLCREVMHTLDERKLHYLIRHPGRHPFECVECGKSFQYKSSLYMHKQEHSPNKQSYTCTYCSKVFAKRDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACQHCPRTFADKGACTSHSRTHSKDTSYACIYCGQTFVQKSKLTYHIRKHTGENLETCTICSKLFTSACSLREHMKIHEAKKKGAVQCPLCERKYQDERYMLRHLRTSHTSTSFPCPLCDKNLTSMAGLRHHVVTHGGVNTFRCKCCPKSYAVKRSVVKHLRKRHGLKGTEINIKDYFKRIDPRDCDLGLDDEAMTKIFGPPKKTMNDILMGDFVTLTDKLTGQNDRNNDDENDGNDDSNDEDDNTNGKEDSDDENANVTEEISTVIIKTEKKDEVDNDEMEPTDFVSIKIEPMDEEASL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00411840;
90% Identity: iTF_00412819;
80% Identity: -