Cpom035067.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- ken
- Assembly
- GCA_033807575.1
- Location
- CM066368.1:11441889-11447622[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00015 1.7 10.1 0.1 21 52 131 162 110 164 0.81 2 8 0.0003 3.3 9.2 0.0 20 44 186 210 169 219 0.82 3 8 0.066 7.3e+02 1.7 0.1 21 45 215 239 209 246 0.76 4 8 0.005 55 5.2 0.1 21 46 243 268 235 276 0.82 5 8 0.054 6e+02 1.9 0.1 21 43 299 321 295 328 0.86 6 8 0.088 9.7e+02 1.3 0.1 21 43 355 377 343 382 0.77 7 8 2.9e-06 0.032 15.6 0.2 21 46 383 408 376 411 0.92 8 8 0.00021 2.3 9.6 0.3 21 43 411 433 409 438 0.91
Sequence Information
- Coding Sequence
- ATGGAGATGGTATGGGTGAAGGAGGAGCCCCCGTGGGAGGTTCCGGCGGAGCCCGAGGGCTCCTCGGGACACGCAAAGCTTCCAGCCCAACATGATGATGTTGCAGCGGCTCCACCATCAGAGTGCGAGATAATGCAGGTCAAGCAGGAGCCTGTATGGGAAGATGGCACCAGCGAACTCAGCGAGACTGAGGGTGGAGTGCAGCCACATGACGAGGTGGTTAAGGAATACGTTCCAGTCAAGGTTGAAGTGGAGTGCGTGAAGCTGGAGCCCGCGGGGGACGGGGAGGGCGGGAGCGGGACAGCAAGCGAGTGCGAGAGTGAGACCGCGCAGAAGAAACAAACGCCGCAAGAATCTGGACAGCCACAACCGTCCAATCACGTCAAAGTAAGCCGCGGGCCCAACTCGTGCGAGATCTGCGGCAAGGAGTTCAAGCAATCCTACAACATCAAGGCTCACATGAGAATACACAGCGGTGACAAACCCTACGCCTGCGACATGTGCGACAAACGCTTCATGACGCCCCGTGACCTGAAGACACACGAACGAACGCACACTGGGGAAAAACCCTACATGTGTAGGATCTGTAAAAAAGTGTTCTCACAATTGGGCAATTTAAAGACACACGAGCGGACACACTCGGGTGATAAACCACACTCCTGTAAAATATGCAACAAAGAATTCGCGGAAACGAGCAGTTTAAAGAAACACGAGCGTATTCACACTGGTGAAAAACCGTATTCGTGCGAAATATGTAGAAAAGAGTTCCGGTTATcgagtatgttaaataaacataaaagagTTCACATGGAAGAAAAACCATACGCATGTGGATTTTGCAGCAAGCAATTTGTGCTACAGGGAGATCTACAAATACATGTACGTATACACACGGGTGAGAGACCCTATGTGTGCGGAATATGCGAAAAGGAGTTCACACGACCGAACACTTTAAAGCGACATGAACGAATTCACACCGGAGAAAAACTATACTGCTGCGAAGTTTGTAAGAAAGAGTTCACTAATTCCAGTGATTTTAAAAAGCATCAGCGAATACATACTGGTGAAAAGCCCTACTCATGTGAAATCTGTAAAAAAGAGTTTACGGGATCAAGCAGTTATTACAGGCATCAACTAGTTCACACAGGGGAGAAGCCATATTCGTGCGACATTTGCCATAAGGAGTTCAGGCAATCGAGCAGCCTGAGGGATCATTTACGAATCCATACTGGTGAAAGGCCTTACGTGTGTACAATATGTGATAAAGACTTTAGGGAATCGTGCGGTTTAAGAAGGCATGAACGGACTCACATGAGGTAA
- Protein Sequence
- MEMVWVKEEPPWEVPAEPEGSSGHAKLPAQHDDVAAAPPSECEIMQVKQEPVWEDGTSELSETEGGVQPHDEVVKEYVPVKVEVECVKLEPAGDGEGGSGTASECESETAQKKQTPQESGQPQPSNHVKVSRGPNSCEICGKEFKQSYNIKAHMRIHSGDKPYACDMCDKRFMTPRDLKTHERTHTGEKPYMCRICKKVFSQLGNLKTHERTHSGDKPHSCKICNKEFAETSSLKKHERIHTGEKPYSCEICRKEFRLSSMLNKHKRVHMEEKPYACGFCSKQFVLQGDLQIHVRIHTGERPYVCGICEKEFTRPNTLKRHERIHTGEKLYCCEVCKKEFTNSSDFKKHQRIHTGEKPYSCEICKKEFTGSSSYYRHQLVHTGEKPYSCDICHKEFRQSSSLRDHLRIHTGERPYVCTICDKDFRESCGLRRHERTHMR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00411692; iTF_00411055; iTF_00410538;
- 90% Identity
- iTF_00411692;
- 80% Identity
- iTF_00411692;