Cfag029862.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750814.1:136420-140727[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00018 2.2 9.5 0.0 21 52 146 177 137 179 0.87 2 9 0.51 6.3e+03 -1.6 0.0 22 43 175 196 171 201 0.83 3 9 0.00021 2.7 9.2 0.0 20 43 201 224 184 233 0.82 4 9 0.11 1.4e+03 0.5 0.1 22 43 231 252 225 257 0.80 5 9 0.0062 78 4.5 0.4 21 46 258 283 250 292 0.82 6 9 0.14 1.7e+03 0.2 0.1 21 46 342 367 324 373 0.75 7 9 0.025 3.2e+02 2.6 0.1 15 43 364 392 360 397 0.78 8 9 1.7e-05 0.21 12.7 0.1 21 52 398 429 393 431 0.90 9 9 0.0067 83 4.4 0.0 21 43 426 448 422 452 0.91
Sequence Information
- Coding Sequence
- ATGGAGATGGTGTGGGTGAAGGAGGAGCCTCTGTGGGAAGCCGCGGCGGAGCCCGAGGGCTCCCCGGGACGCGCAGAGAACCCAGCCCCGCATGACGATGTTGCAGCCGCCCCACAGCCGGAGTCTGGAATCGTGTCAGTAAAGCAGGAGCCCGTATCAGAGGACGCCACAGGCGAGCCCGGCGAGGCCCAGTGTGGAGTGCAGCCACAGGATGAGCTGGTTCAGGAACACGTTCGAGTCAAGATTGAAGTGGAGTGTGTGAAGCGGGAGTCCGCGGGGGAGGGAGAGGGGCAGGGGGAGGAGGCGGAGGGTGGGAGCCGGACAGCCAGCGAGGGCGAGAAGGAGACCGCGCAGGAAGGGACACAAACACCGCAAGAGTCTGGTCAAGCACAAGAGCAAGCGCGCGACTCGCAACCGACCAATCACGGTCATGTGAGCCGCGGGCCCAACTCGTGCGAGATCTGCGGCAAGGAGTTCAAGCAATCCTACAACATCAAGGCTCACATGAGAATACACAGCGGCGACAAACCCTACGCCTGCGATATGTGCGACAAACGCTTCATGACGCCGCGCGACCTGAAGACACACGAACGGACGCACACCGGGGAAAAACCCTACATGTGTAAGATCTGTAAAAAAGTATTTTCACAATTGGGAAATTTAAAGACACACGAGCGGACACACACGGGCGACAAACCACACTCCTGTAAAATATGCAATAAAGAATTTGCGGAGACGAGTAGTTTGAAAAAACATGAGCGTATTCACACTGGTGAAAAGCCGTATTCGTGCGAAATATGTAGAAGAGAGTTCCGGTTATCGAGTATGTTAACTAAACATAAAAGAGTTCACATGGAAGAAAAACCATACGCCTGTGGTTTTTGTAGCAAGCAGTTTGTGCTACAGGGAGATCTACAAATACATGTCCGTATACACACGGGTGACAGACCCTACGTGTGCGGAACATGCGACAAGGAGTTTACACGACCGAATACTTTGAAGCGACATGAACGAATTCACACAGGCGAAAAACTGTACTGCTGTGAAGTCTGTCAAAAAGAGTTTACTAATTCCAGTGATTTAAAAAAGCATCGGCGAATACACACTGGTGAAAAGCCGTACTCATGTGAAATCTGTAAAAAAGAGTTTACGGGCTCGAGCAGTTATCACAGGCATAAACTAGTTCACACAGGGGAGAAGCCGTATTCGTGCGAGATTTGCCATAAGGAGTTCAGGCAAACGAGTAGTTTAAAGGATCATTTACGAATCCATACCGGTGAAAAGCCTTACGTGTGTGATTTATGTAATAAAGACTTTAGGGAATTGAGCGGTCTAAGAAGGCATAAACGAACTCACACGAGGTAA
- Protein Sequence
- MEMVWVKEEPLWEAAAEPEGSPGRAENPAPHDDVAAAPQPESGIVSVKQEPVSEDATGEPGEAQCGVQPQDELVQEHVRVKIEVECVKRESAGEGEGQGEEAEGGSRTASEGEKETAQEGTQTPQESGQAQEQARDSQPTNHGHVSRGPNSCEICGKEFKQSYNIKAHMRIHSGDKPYACDMCDKRFMTPRDLKTHERTHTGEKPYMCKICKKVFSQLGNLKTHERTHTGDKPHSCKICNKEFAETSSLKKHERIHTGEKPYSCEICRREFRLSSMLTKHKRVHMEEKPYACGFCSKQFVLQGDLQIHVRIHTGDRPYVCGTCDKEFTRPNTLKRHERIHTGEKLYCCEVCQKEFTNSSDLKKHRRIHTGEKPYSCEICKKEFTGSSSYHRHKLVHTGEKPYSCEICHKEFRQTSSLKDHLRIHTGEKPYVCDLCNKDFRELSGLRRHKRTHTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00412175;
- 90% Identity
- iTF_00410538;
- 80% Identity
- iTF_00410538;