Cpom009757.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia pomonella
Gene Symbol
-
Assembly
GCA_033807575.1
Location
CM066348.1:9115233-9121376[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.24 20 7.2 3.4 2 22 193 213 192 213 0.95
2 15 0.37 31 6.5 0.2 2 23 470 491 469 491 0.96
3 15 0.0083 0.69 11.7 0.8 2 23 568 589 567 589 0.97
4 15 0.092 7.6 8.4 1.9 1 23 597 619 597 619 0.97
5 15 0.12 10 8.0 3.6 1 23 654 676 654 676 0.95
6 15 0.00066 0.055 15.2 5.4 1 23 684 706 684 706 0.99
7 15 0.059 4.9 9.1 1.8 1 23 786 808 786 808 0.99
8 15 6.4 5.3e+02 2.6 2.3 1 19 863 881 863 885 0.90
9 15 0.99 83 5.2 1.0 2 23 892 913 891 913 0.92
10 15 0.036 3 9.7 0.8 1 23 979 1001 979 1001 0.95
11 15 0.008 0.67 11.8 2.3 1 23 1007 1029 1007 1029 0.95
12 15 0.009 0.75 11.6 2.6 1 23 1119 1141 1119 1141 0.97
13 15 0.00012 0.0099 17.5 1.2 1 23 1147 1169 1147 1169 0.99
14 15 0.99 82 5.2 2.2 1 23 1261 1283 1261 1283 0.96
15 15 0.0024 0.2 13.4 4.5 1 23 1294 1316 1294 1316 0.98

Sequence Information

Coding Sequence
ATGGGTCTCCAATATGCAGATATAGAAATGATTACTTGTACCAGTGATAACGAAACGAGCACTGAAACCGCTGCCAAAAAAGACAATGAATTGGCACAAGATAAGCAACATCGACCATCGCCAAACAGCACGACGGGAGAAGggaatacaaacaaacaaagcCGAAAAATACCTAGACCGATACCGCAACTAATACCTCTGAACACGTCGACGCCCAATCAAAATAAATCACCGCCAGGAGAGCCACCGCTCAAAAAGTTTAAAGAAGATCCAAGTAGAGATACTAATACAGTTGATAACGTCGACAATTTTCCAGCTGATATCACAATTATACCTGTCACCAATGGTACACCCCTTACTACAAGAGAACCTGCGATGAAAAAGAAAAACGAATCCTTTTTTGACAGACTAAAAGAAAGGTTGCTTACCGCAACTGGAGAGGAAGGAACGTTGACATGCAAAAACTGCGGGTTTGAAAGCAAATGCTTATCAGAACATTCCGTACACGAAAAGAACTGCACAGTATCCGCGAACAGGGTTTTGGCAAATAACACACACACAAGCCTTGGCTCTACGCGTTGCCAGAATTGCCGGCATAGATGCAAATCAAGTGCCGATTTATATGTTCACATGCAAACATGTGGCAAAGTGGAGAAAGCAGAAAATGAACAATCAAATGACAGTGAAAACAAACACGAAGCCACGTCAACAGCCCATGAAACCGATGTTGTTAAAGATGAACCACATCCCATGGAGAATGTAGTCTTTGTTTGGAATAATATTAATCCCGATACCGCCAAATTTGAGACGCCGTTGGACATCAATATTAATGATGATTCAACTATGCCCGAAACAAGTAAAAACTATGACTTAGAAATAGTTGATGAAAATGAAGGCATGAACTTGTCACCGAGCCAAGCTGCCGgaaaaaaggtatttaaatgtCCGCACTGCACGTTCTGGGCATCGACTGCATCACGATTCCATGTTCACATCGTCGggcatttgaataaaaaaccTTTCGAATGCTCCCTTTGCAAATATAAATCGAATTGGAGATGGGACATCACCAAACACATAAAACTAAAATCAGCAAGAGACCCTGAACATAATGATGCCAAAGTTTTGATGACTGATGAAACTGGACGAAGGAACTACAGTAAGTACAACAAGTTCTTAGCCGTGCCTGTCGTAAACGAATATGGAGAAACCGAGTTTGACTATATAGATCCAAACGCAATGGCGAACGGGAGCATGGAACTCGATGAATCATTCAACGACACGAATGATAATATCAACACAACACTTGAAATGCAACCTCTTGACTTGCAAACTCTACATGGACAGCACAATATCGAGCCAATGGATATCAAAAATGAAGAACAGAAACCTAAGAAAACGATGTGGAAATGCAAAAAATGTAACTACAAGGACCCGTCGAAGGAAGCGCTACTAGCACATGTCCGTGAGCACTCGAAGCCCGAAGACGGACACGAGGAGAACAAGTCCTTCACCAAGAAACCTGAGAACACGCCGGACCCGGCCGACCTGGCTTACCGCTGCGGGCACTGCAACCAGTTGTCCAACTGGAAGCACGTCATACAAAGACACTGTCGTTTGAAGCATGATGGAGTCATCAAAGTTATTACCACGGTTAAACCGAAACCTGATGCCTCGTCATTATTGAACGAAATGAACGACACTTGCACCAAATGTCCGTTCAAAGCTGCAGACAGAAAACAACTTCAAAACCACATGCAGCAGCACCAGCCTTCGCCCCTGTCCATATTCAAATGCTACTTCTGTCCGTACTTCGTTAAAACTGAACACGACTTACTGCAACATCTAGCTTTACATGGTGTCACAGACCCAGAAGAATACATCTCCAAAGCAATGGGATGCAAGTCGCCGCTGCCAGATAATCCTGGAAATTCGAGCGGGTCCATCTCAACCAAACGACACAAGTGCACGGAGTGTCCCTACGAAACCAATAGCAAGTCCCAGTTCATGTATCACGAGCAATTCCACCGGCTCCCGGCTGACACTCCATACAAATGTCAGGAATGCAACTACAGCGTTTCCAAGAGACACCTCCTCCATCAGCACATGAGAGTTCACGGGATCATGCCTAAGAAAAGTGAAATGGAATTAGAAATGGAAGCGTCTTCGTCCTCTTGTAAGATGGAGATTCCTATCGATTTAAACGAAATTCCTTTCGTATGGGTTTCGGCTAAGAacgaatttcacaaaatgtacaaatgcCGCTACTGTTCGTACGTGAATTCCCAAAAGTGTAAGATACCAAATCATGAGAAGATTCATTGTATCGTCTTTGAAAACAGTGAAATCACTATTTACAAATGTTTGGAATGCAAGTTTACTTGCGATAATGCCGGAAGGTTGGCCGAACATTCGAGGACGCACGGAGAAATTTACGGACGCATTTACTGTCCAGTTGAACCCGATGTTCCCGATGAGGAGCAGATTACTAAATTACGCAAAGTTATAGAAACGGAGAAAATAAACAACCCGAATAGCCCCAGGGACGAGATGCTTCTAAAAGACAATGAAGAACTGAAAATATTGTTCTTCTGTCATAAATGCCCGGCTAGATTTTTTATTGATAGTGATTTGAGAATCCATGACAAATTCCACGATCTGTTGTTTGCGAACAAATGCAAGCTTTGTGAGTTTTCAGTGCCCCAAGAGACTGAATTAAAAACTCATGCGGTCCACCATTCCGATGAGTATGCGACGGAAACTAAAATGCTCAAGTTTAAGCACCGATCTCACCCAGCGCACAAGGAGCCGAAATTGGAGGTTGTACACTGCCCGCTTACTTCAGAAGTTAATTGGATAGTTTCGCACCCGTCGACTAACTTTGAGATTGTAGATTCTTCGAAAAAATGCAACGAAAATAGAGTGCCTAAGCAATATTTCTGCAAGGAATGTCCAGCCAAATTCTTTAAAACTTCTGCTTTAAGTTATCACATGGGATTGCACGGAGGGGATGGCGACCACAAATGCAAAAAATGTAGTTACACTGTTAAAAACTTAGGGAATTTGGCCAAACACGAATCGTTACACGAGAATGAAGGAAAAAACAACACGTGTGATTACGAATCCGGAGAAGACAACGATTACAAAAACATTCCATTATCTGGTACAGATCTATTTCAACGGAAAACTGAAGCGCAGAAAAGAGTTGTAAAAGATAACAACAAGTTAGTGAAACCTAACGACCATTTTCCACCTGTACTACAGGCAGATCCTCAATTCGGATACTTAATGCACGGTAACCCAGAGTTTATCTATCCTACATACATGAAAAATGGCCGCCAAAAAGAGAAAAGGTATAAGTGCCACAAGTGCCCATCCGCGTTTGAGAAAAGagaacaatacaaaatacatttatcgCTGCACGGATCCAAACAGAGATACAAGTGCGAAGTGTGTGATTATTCTGTAAAATACTATGCCAACTACGTGCAGCACATGAGGAAACATCAAATGAATGACGAAGCACAGGCTGAGAGAAGAAAAAATAACGAAGAGACTAATGAAGCTGAAAACGAGACACAGGAAGATAAACCAGCAAAAGGAAATATTAAGCTAGCGATTAAAACAATGCCAAAGGGGCCAACAAGGCCAAAAAGTGATTTTCAGCAGTTTTCTGTCAGTGACCAACAGACACTCCGCCTACTACAACTAAGGCGGTCTATAAATAATGCAGAAAAAGAAAAGCAACCGGACCCCACACCCACAAAGGAACGTAAGCTACACATGTGTCTGTTATGTCCGTACACGAACCAGCGCCAAGATGCTTTAACAAATCACTATAAGAGACACGAAGATAACCTAAATGCCGCGAATGGAATACATAAATGTCCTCATTGTGACCTAGTCGTCGTTCAATCACACTTTCTACGGGAACATCTGAAGACTCATTTTAATTATCAAAAGCATTTGACCCCTGAATGCTATGCAGCTAGTGAAGGTGTGACTTTTGTCATAAAACAACTCGATGATGAAGAAGATACAAAAGATGACGACAAGAGTGAAAATTTAAATGAAGATATTTCTGATATTGAAGTTAAAGAAAAGGATTATTTAATCGATGATAATAAAGCAGAAGATAACAAAATATTTGATCTGAAAGATATCATTAAAAATGGACAGACAAATGGtcctaaattaaatttaaaaattgcgGTGAAAGAAGAGACTTCTACTGATCTAGTTATTACTTTAGATGAAAAAATTACTTTCGATTCAAATGATAATAAGATTTTTGTCAAACTTAAAACAGGGGAGCTTATTGTAGAGTAA
Protein Sequence
MGLQYADIEMITCTSDNETSTETAAKKDNELAQDKQHRPSPNSTTGEGNTNKQSRKIPRPIPQLIPLNTSTPNQNKSPPGEPPLKKFKEDPSRDTNTVDNVDNFPADITIIPVTNGTPLTTREPAMKKKNESFFDRLKERLLTATGEEGTLTCKNCGFESKCLSEHSVHEKNCTVSANRVLANNTHTSLGSTRCQNCRHRCKSSADLYVHMQTCGKVEKAENEQSNDSENKHEATSTAHETDVVKDEPHPMENVVFVWNNINPDTAKFETPLDININDDSTMPETSKNYDLEIVDENEGMNLSPSQAAGKKVFKCPHCTFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAVPVVNEYGETEFDYIDPNAMANGSMELDESFNDTNDNINTTLEMQPLDLQTLHGQHNIEPMDIKNEEQKPKKTMWKCKKCNYKDPSKEALLAHVREHSKPEDGHEENKSFTKKPENTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDASSLLNEMNDTCTKCPFKAADRKQLQNHMQQHQPSPLSIFKCYFCPYFVKTEHDLLQHLALHGVTDPEEYISKAMGCKSPLPDNPGNSSGSISTKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCQECNYSVSKRHLLHQHMRVHGIMPKKSEMELEMEASSSSCKMEIPIDLNEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIVFENSEITIYKCLECKFTCDNAGRLAEHSRTHGEIYGRIYCPVEPDVPDEEQITKLRKVIETEKINNPNSPRDEMLLKDNEELKILFFCHKCPARFFIDSDLRIHDKFHDLLFANKCKLCEFSVPQETELKTHAVHHSDEYATETKMLKFKHRSHPAHKEPKLEVVHCPLTSEVNWIVSHPSTNFEIVDSSKKCNENRVPKQYFCKECPAKFFKTSALSYHMGLHGGDGDHKCKKCSYTVKNLGNLAKHESLHENEGKNNTCDYESGEDNDYKNIPLSGTDLFQRKTEAQKRVVKDNNKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYMKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCEVCDYSVKYYANYVQHMRKHQMNDEAQAERRKNNEETNEAENETQEDKPAKGNIKLAIKTMPKGPTRPKSDFQQFSVSDQQTLRLLQLRRSINNAEKEKQPDPTPTKERKLHMCLLCPYTNQRQDALTNHYKRHEDNLNAANGIHKCPHCDLVVVQSHFLREHLKTHFNYQKHLTPECYAASEGVTFVIKQLDDEEDTKDDDKSENLNEDISDIEVKEKDYLIDDNKAEDNKIFDLKDIIKNGQTNGPKLNLKIAVKEETSTDLVITLDEKITFDSNDNKIFVKLKTGELIVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00150040;
90% Identity
iTF_01134374;
80% Identity
-