Cpom036340.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia pomonella
Gene Symbol
-
Assembly
GCA_033807575.1
Location
CM066370.1:5757468-5775097[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.21 18 7.3 0.2 1 23 354 376 354 376 0.98
2 11 0.00058 0.049 15.3 7.5 1 23 383 405 383 406 0.95
3 11 0.1 8.6 8.3 1.8 1 23 410 432 410 432 0.97
4 11 0.093 7.8 8.4 1.8 1 23 437 460 437 460 0.97
5 11 0.013 1.1 11.1 0.4 1 23 464 487 464 487 0.94
6 11 0.0041 0.34 12.7 0.5 3 21 501 519 500 524 0.93
7 11 1.7 1.4e+02 4.5 0.4 2 23 577 599 576 599 0.94
8 11 0.016 1.3 10.9 1.0 2 20 615 633 614 636 0.89
9 11 3.8e-05 0.0031 19.1 1.4 1 23 642 664 642 664 0.99
10 11 2.1e-05 0.0017 19.9 5.1 1 23 671 693 671 693 0.98
11 11 7.8e-05 0.0065 18.1 4.1 1 23 699 722 699 722 0.95

Sequence Information

Coding Sequence
ATGCGGTGTTGTGTACCGGGCTGCAAAAATGACTCGAGACATATCTCGAAGTCTCAGGGAATCACTTTTCATATTTTTCCCACTGAGGCAACACTTCGCTCCTCCTGGCTTCGGGCTCTTGGCAAAGAATCGTGGGAGCCCAAGGAACGCAGCGCGGTCTGCTCGGAGCATTTCCTCTGTGAAGACCTGTACGAGACTAAGAGTGGGCTCAGGAAAGTGAGGGCGGGTGCTGTGCCTATTGTGCGAGATGTTACTTGTGACTATGGGGAAGCCAATACTTTGCAGGTGTGCCGAATATGCCTCGCGGTGGACGGCAGGCTGCTCTCCATTAGGAAGTACCGATTGGAAGAAGCTTATCACCACCTAACAGGGCTTGAGTGTGAAGATAAGCTACCCGGCCAGCTATGTGTAGAATGCGCTCACCGCCTTCTAAACAGCAGTAGACTTAGGAACAAAAGTCTACGAGCGCATTCAATAATGATGGAGATCGTGAGCAGACAGGATAGCCTAACACTACAACATCTAGCTACAATAAACAGAGACAATAATAGACTGACCTCAAACCTAGGTCCTAAACATTATGAACCTAACATCTACAACCAAACCTTAGACCACGACACAATTGACGAAAAAGAACCAATATTCGAAGTTAATATCACAGATGAAATAGTAATCAAACacgaaaataatgattttaatgaAGATAACGAAATGAAAGAGGAAAATAATGAAGTTGGTTATGAAGATAATGACAATGATGTAGATTTTGTGGCGTCAGATAGAGAATATTCGACCGATGACAGTTTGCCGTTAGAAGCTAGGAGGAAAAAGAAGGAGAAGGTTAAGAAGAATAAGATTGAGAAGAAGGAAGTTATTAAGAAGGTGCGAAAAAGACAAGTGAAAAAAGACCCAACGCTGCCTAAAATCGACCGGCGACGGAAGCCATTTTTAAATGACGAATTGAACGAAACTCTGTTTACGATTACGGATCTCACTCAAGATGAGCAGCTAGAAGAGATACGAAAGAGACAGGAGACTGCTAACTACAAAAATTCTGTGTTCAAATGTGAAGCGTGCTTCAAAGGCTTCCTGGACGAGGATGCTTACAATAGTCACATCATTAGACATACAGATCAATGCGGCGAATACGAGTGCAACATATGCAAAACGCATTTCAAGCATCCGCACGCCTTGAGGAAACATATCACGGCGCACCACACGCAACGATTTAGTTGCAACCAGTGTCCTTACGTCACCACCCAcagACAAACGGCTAGACTACATGAAAGATGGCATAAAGGCACCAAATATCAGTGCCCACATTGTCAAGATGAGTTTGTTAAATTCACAACCTACATGGGGCACATACGCATCAAGCATCCGTCCGACTTCGTGTGCCAGCTGTGCGGGTATTCCTTCGTGAGCGAGAAAGGGATAGAGCTACACAAGAAGCTGAAACACAGACTCGACGACCCCCAGATACCAGAGGACGGGCCTTTCTGCGAGCTTTGCAACGTACGTTTTGTGTCTAACGAGGCTCTGAGAAGGCACATTCACGTCTCGGCCAGACACGCGGGCAGCGACAAAGACGACAAGGAAGCCAACAAGGCGAATAGGCCACGAAGACCGCGGGAGCCGAACGTGGCGCGCGAGCGGAAGCGGTCGCGGAGCACCTCGAGCGAGCGCCGCCGCTACCCCAGCCAGCTGCGCAAGGCTGAAGGACCCATCCCTTGTGAACAGTGTGGGATGCAACTAGAGGATTCCCGGGCGTACCACGGCCATTTCCGGCGGATGCATCCGGACAAGAATCGAACCAACTACCCGTCCATGAAGTCGCCGTGCATGTGCGAAGTGTGCGGACGGATGTTCCAGAGCTACGCCCTCCTAAAAGACCACACCTGGACCCACACGGGCGAGCGGCCCTTCAAATGCGACTCGTGCGGCAAATCGTTCCGTATGAAGCAACGCCTCGTCGCGCACCGCCGCGTGCACAGCGCGCAGCGCGCCACCTACGTGTGCAGCGTGTGCGGGAAGCACTTCAGCACGCACAGCAACCGGCAGCGGCACATGTTTATTCACACCGGCCTAAAACCATTCAAGTGCGAAATGTGTGGGAAGTGTTTCAAACACGCAAGCGAGAAGCGAGCACACATCACATATGTACATCTCAAGAAACCGTGGCCCAAGCGTGCTCGGGGCAAGCGTCGGGATTCCAGACAGagTATGCAGCACCCTCAAATGTCGGTGGGCACgagcgcgagcgagatggacaTAGTGCAGCCGCTGTGGCCGTCCTGCGACCCGAAGCTGGCCGACATCAACGCGATGATGGACGACAAGCCTATGTATTATAACCTCAAGATATAG
Protein Sequence
MRCCVPGCKNDSRHISKSQGITFHIFPTEATLRSSWLRALGKESWEPKERSAVCSEHFLCEDLYETKSGLRKVRAGAVPIVRDVTCDYGEANTLQVCRICLAVDGRLLSIRKYRLEEAYHHLTGLECEDKLPGQLCVECAHRLLNSSRLRNKSLRAHSIMMEIVSRQDSLTLQHLATINRDNNRLTSNLGPKHYEPNIYNQTLDHDTIDEKEPIFEVNITDEIVIKHENNDFNEDNEMKEENNEVGYEDNDNDVDFVASDREYSTDDSLPLEARRKKKEKVKKNKIEKKEVIKKVRKRQVKKDPTLPKIDRRRKPFLNDELNETLFTITDLTQDEQLEEIRKRQETANYKNSVFKCEACFKGFLDEDAYNSHIIRHTDQCGEYECNICKTHFKHPHALRKHITAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFVCQLCGYSFVSEKGIELHKKLKHRLDDPQIPEDGPFCELCNVRFVSNEALRRHIHVSARHAGSDKDDKEANKANRPRRPREPNVARERKRSRSTSSERRRYPSQLRKAEGPIPCEQCGMQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHTWTHTGERPFKCDSCGKSFRMKQRLVAHRRVHSAQRATYVCSVCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKCFKHASEKRAHITYVHLKKPWPKRARGKRRDSRQSMQHPQMSVGTSASEMDIVQPLWPSCDPKLADINAMMDDKPMYYNLKI