Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421927.1:5272139-5286524[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.69 61 5.6 0.2 1 23 372 394 372 394 0.97

2 12 0.00093 0.082 14.7 6.6 1 23 401 423 401 424 0.95

3 12 0.1 9.2 8.2 1.8 1 23 428 450 428 450 0.97

4 12 0.094 8.2 8.4 1.8 1 23 455 478 455 478 0.97

5 12 0.013 1.1 11.1 0.4 1 23 482 505 482 505 0.94

6 12 0.011 0.95 11.3 0.5 3 20 519 536 518 542 0.92

7 12 1.7 1.5e+02 4.4 0.4 2 23 595 617 594 617 0.94

8 12 0.016 1.4 10.8 1.0 2 20 633 651 632 654 0.89

9 12 3.8e-05 0.0033 19.0 1.4 1 23 660 682 660 682 0.99

10 12 3.9e-05 0.0035 19.0 2.0 1 20 689 708 689 710 0.96

11 12 0.11 10 8.1 3.8 3 23 744 766 743 766 0.93

12 12 2.8e-05 0.0024 19.5 1.7 1 20 773 792 773 794 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.69	61	5.6	0.2	1	23	372	394	372	394	0.97
2	12	0.00093	0.082	14.7	6.6	1	23	401	423	401	424	0.95
3	12	0.1	9.2	8.2	1.8	1	23	428	450	428	450	0.97
4	12	0.094	8.2	8.4	1.8	1	23	455	478	455	478	0.97
5	12	0.013	1.1	11.1	0.4	1	23	482	505	482	505	0.94
6	12	0.011	0.95	11.3	0.5	3	20	519	536	518	542	0.92
7	12	1.7	1.5e+02	4.4	0.4	2	23	595	617	594	617	0.94
8	12	0.016	1.4	10.8	1.0	2	20	633	651	632	654	0.89
9	12	3.8e-05	0.0033	19.0	1.4	1	23	660	682	660	682	0.99
10	12	3.9e-05	0.0035	19.0	2.0	1	20	689	708	689	710	0.96
11	12	0.11	10	8.1	3.8	3	23	744	766	743	766	0.93
12	12	2.8e-05	0.0024	19.5	1.7	1	20	773	792	773	794	0.95

Sequence Information

Coding Sequence: atgcgGTGCTGCGTGCCGGGCTGCAAAAATGACTCGAGACATATCTCGAAGTCCCAGGGAATCACCTTTCACATTTTCCCTACGGAGCCAAGTCTCCGCTCCGCCTGGCTTCGAGCTCTCGGCAAAGACTCATGGGAGCCCAAGGACCGCAGTGCGGTGTGCTCTGAGCATTTCGTCTGCGAAGATCTTTATGAGACCAAGAGTGGTTTGAGGAAAGTGAAGGCTGGTGCAGTGCCCATAGTGCAAGATACTGGGTGTGACTATGGGGCTGTTGATCTTCAGGTGTGTCGAATATGCTTGGCGGTGGACGGCAGACTTCTATCCATCAGAAAATATCGGCTGGCTGAGGCCTACCACAACCTCACGGGGCTCGGGTGGGAAGACAAACTGCCTGGCCAACTGTGTGTGGAGTGCGCTCACCGACTTCTAAACAGTAATAGACTTAGGAACAAAAGTCTAAGAGCGCATTCTATCATGATGGAAATTGTTACGAGACAGGATAGCcTATCACTACAAAACCTAGCAACAATAAATCGAGACAATAATAGACTAACGTCGAACCTAGGTCCTATATATTATGAACCTAATTTTTACAATCTGACTCTAGATCACGACTTAATTTTCGAGGAAAAAGAGCTAACTATATGTGAAGTAAATGTCACTGATGAAATCGTAATAAAGAATGAAACCAATTTTAATGatgataatgaaatgaaattggaAAATAATGATGAAACTAATGATAATGATGGAAATAATGAGAAAGAtgtaaataatgataatgatgaaattaatgaaaatgatGATAATAACGATGTTGATTTTGTTGCGGATAGAGAATATTCGACAGATGACAGTTTGCCTTTAGAAGCTAGGAGGAAAAAAAAGGAGAagattaagaaaaataaaatcgaaaagaAGGAGATTATTAAAAAGGTTCGAAAAAGACAGGTGAAGAAAGACCCGGTGCAGCCAAAGATCGACAGGCGACGAAAACCGTTTCTAAATGACGAGTTAAATGAAACTCTGTTCACGATCACCGATCTTACTCAGGAGGAGCAGCTGGAGGAGATACGGAAGCGGCAGGAAACTGCAAACTACAAaaactcCGTGTTTAAATGCGAAGCGTGCTTTAAAGGGTTCCTCGATGAAGATGCTTACAATAGTCACGTTATAAGACACACTGATCAATGCGGTGAATACGAATGTGGCATTTGCAAGACGCATTTCAAACATCCACACGCTCTAAGGAAGCATATCACTGCGCATCACACACAGCGGTTTAGCTGCAACCAGTGTCCGTACGTCACCACCCATAGACAGACTGCCCGGCTTCACGAGAGATGGCATAAAGGGACCAAATACCAATGCCCTCACTGTCAAGACGAGTTTGTTAAGTTCACAACGTACATGGGCCACATCCGCATCAAGCATCCGTCGGACTTCGTGTGCCAGCTGTGCGGGTACTCCTTCGTCAGCGAGAAAGGGATAGAGCTACACAAGAAGCTGAAACACAGGCTCGACGATCCGCAGATACCAGAGGACGGACCGTTCTGTGAGCTGTGCAACGTTCGCTTCGTGTCCAACGAGGCCCTGAGGAGACATGTCCACGTGTCGGCCAGACACGCGGGCAGCGACAAAGACGACAAGGAACCCAACAAATCGAGGAGGCCACGAAAACCGCGGGAGCCGAACGTGGCGCGCGAGCGGAAGCGATCGCGGAGCGACTCGAGCGAGCGGCGGCGCTACCCCAGCCAGCTGCGCAAGGCCGAGGGCCCCATCCCGTGTGAACAGTGTGGCATGCAGCTAGAAGACTCTAGGGCGTACCACGGCCACTTCCGGCGGATGCATCCGGACAAGAATCGAACCAACTACCCCTCGATGAAGTCACCTTGCATGTGCGAGGTGTGCGGACGGATGTTCCAGAGCTACGCCCTCCTGAAAGACCACACATGGACGCACACTGGCGAGCGCCCCTTTAAATGCGACTCGTGCGGCAAATCCTTCCGCATGAAGCAACGCCTTGTGGCACACCGCCGCGTGCACAGCTCGCAGCGCGCCACGTACGTGTGCGGCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCATATGTTTCTCGCAGCGCGCCACGTACGTGTGCGGCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCATATGTTTGTGAGTACACCGAGCGTGCCGCATGCCACACGCACTCGTGCGGCACATCCTTCCGCATGAAGCAACGCCTTGTGGCACACCGCCGCGTGCACAGCTCGCAGCGCGCCACGTACGTGTGCGGCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCATATGTTTGTGAGTACACCGAGCGTGCCGCATGCCACACGCACTCGTGCGGCACATCCTTCCGCATGA
Protein Sequence: MRCCVPGCKNDSRHISKSQGITFHIFPTEPSLRSAWLRALGKDSWEPKDRSAVCSEHFVCEDLYETKSGLRKVKAGAVPIVQDTGCDYGAVDLQVCRICLAVDGRLLSIRKYRLAEAYHNLTGLGWEDKLPGQLCVECAHRLLNSNRLRNKSLRAHSIMMEIVTRQDSLSLQNLATINRDNNRLTSNLGPIYYEPNFYNLTLDHDLIFEEKELTICEVNVTDEIVIKNETNFNDDNEMKLENNDETNDNDGNNEKDVNNDNDEINENDDNNDVDFVADREYSTDDSLPLEARRKKKEKIKKNKIEKKEIIKKVRKRQVKKDPVQPKIDRRRKPFLNDELNETLFTITDLTQEEQLEEIRKRQETANYKNSVFKCEACFKGFLDEDAYNSHVIRHTDQCGEYECGICKTHFKHPHALRKHITAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFVCQLCGYSFVSEKGIELHKKLKHRLDDPQIPEDGPFCELCNVRFVSNEALRRHVHVSARHAGSDKDDKEPNKSRRPRKPREPNVARERKRSRSDSSERRRYPSQLRKAEGPIPCEQCGMQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHTWTHTGERPFKCDSCGKSFRMKQRLVAHRRVHSSQRATYVCGVCGKHFSTHSNRQRHMFLAARHVRVRRVRQALQHAQQPPAAYVCEYTERAACHTHSCGTSFRMKQRLVAHRRVHSSQRATYVCGVCGKHFSTHSNRQRHMFVSTPSVPHATRTRAAHPSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00411872;
90% Identity: iTF_00871356;
80% Identity: iTF_00871356;