Basic Information

Insect: Cydia pomonella
Gene Symbol: BCL11B
Assembly: GCA_033807575.1
Location: CM066368.1:5154319-5162936[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00022 0.019 16.7 7.0 1 23 172 194 172 194 0.98

2 16 3.2e-06 0.00027 22.5 1.6 1 23 200 222 200 222 0.95

3 16 7.6e-06 0.00063 21.3 2.1 1 23 228 250 228 250 0.98

4 16 8.1e-07 6.7e-05 24.3 1.0 1 23 256 278 256 278 0.97

5 16 2.1e-06 0.00017 23.1 0.9 1 23 307 329 307 329 0.98

6 16 0.00053 0.044 15.5 0.7 1 23 335 357 335 357 0.92

7 16 1.2e-05 0.001 20.7 1.2 1 23 363 385 363 385 0.98

8 16 6.5e-06 0.00054 21.5 0.4 1 23 391 413 391 413 0.98

9 16 0.00035 0.029 16.0 1.5 1 23 419 442 419 442 0.97

10 16 3.1e-06 0.00026 22.5 2.0 1 23 456 478 456 478 0.98

11 16 7.6e-05 0.0063 18.1 2.1 1 23 484 506 484 506 0.97

12 16 1.7e-05 0.0014 20.2 1.3 1 23 522 544 522 544 0.97

13 16 0.00014 0.012 17.3 6.2 1 23 550 572 550 572 0.98

14 16 4.3e-06 0.00036 22.1 2.8 1 23 578 601 578 601 0.97

15 16 0.00034 0.028 16.1 0.1 1 23 607 629 607 629 0.97

16 16 0.0017 0.14 13.9 2.1 1 23 635 658 635 659 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00022	0.019	16.7	7.0	1	23	172	194	172	194	0.98
2	16	3.2e-06	0.00027	22.5	1.6	1	23	200	222	200	222	0.95
3	16	7.6e-06	0.00063	21.3	2.1	1	23	228	250	228	250	0.98
4	16	8.1e-07	6.7e-05	24.3	1.0	1	23	256	278	256	278	0.97
5	16	2.1e-06	0.00017	23.1	0.9	1	23	307	329	307	329	0.98
6	16	0.00053	0.044	15.5	0.7	1	23	335	357	335	357	0.92
7	16	1.2e-05	0.001	20.7	1.2	1	23	363	385	363	385	0.98
8	16	6.5e-06	0.00054	21.5	0.4	1	23	391	413	391	413	0.98
9	16	0.00035	0.029	16.0	1.5	1	23	419	442	419	442	0.97
10	16	3.1e-06	0.00026	22.5	2.0	1	23	456	478	456	478	0.98
11	16	7.6e-05	0.0063	18.1	2.1	1	23	484	506	484	506	0.97
12	16	1.7e-05	0.0014	20.2	1.3	1	23	522	544	522	544	0.97
13	16	0.00014	0.012	17.3	6.2	1	23	550	572	550	572	0.98
14	16	4.3e-06	0.00036	22.1	2.8	1	23	578	601	578	601	0.97
15	16	0.00034	0.028	16.1	0.1	1	23	607	629	607	629	0.97
16	16	0.0017	0.14	13.9	2.1	1	23	635	658	635	659	0.95

Sequence Information

Coding Sequence: ATGGAGGAGTTGCACTCGTGTAGCTGCTGCCTGGAGCGCCCTCCAGAAAAGGGGCTCAAGACTCTGTATAAACATCTCGGCAGGACAGAGATATATTACGACATGCTGAGAGACTGCTTCGATATTAATCTTAGCTTAGGAAATGACGAATGCGGGATCTGCGAAGTGTGCGTGGGGCGGCTGCGGGACGCGAGCGACTTCAAGCTGCAAGTGCAGCGCAGCCAGGCTCAGCTGCGCGCGCGGCTCAAGGGAGTGCTCACTGCCAGTGACAAATTGAAAATCAAGTTGGAGAGAGCTTCTGGAGACGTCGCCATAATtcCAGGTGAAATCAAGCTGGAAAAATCCGAAGTGGAGATGGCTGATGGTGAGGTTGTATCagTGGCAATATACGGCGGGCCGCCAGCGCCATCAGCGCAACCCGTCCCCACCGCGTCCCGCATCTCCTTCAAGCCGGCGCCCAGCGTCACCAACCTCGACGACTCCGACCCGACTCCTCCCAACCGCGGCACCATACACACCTGCGACATATGCCACAAGTCGTTCGACCACCAAGCCCGATTAAAGGTCCACAGGCGGTCTCATACTGGAGAAAAGCCTTACTCATGCAAAGTATGCAACAAAAAATTCGCTCAAAAGAGCAACTTAAACGCTCATTTCGCATACCACATGGGTGACTACAAATTCTCCTGCGAGTTATGCGACACGCGATTCACCCAAAAGTCTCACTGGGTTAAACATATGCTTATACACACTGGCGAGAAACCGTACGCTTGTGATATATGTAACAAAAAATTTAGACAAAAAGGAAACTTAAATGTTCACAAAaaaattcatttgaaaaatGATATAGAGCCTGGAGAAATAACTGCGCACAAGAGAGAGTCAGATGAATTTAAAGATCGAGTTCCCACTGAATTTTTCACATGTGATATATGCAAAAAGCAATTTGCAGAAAAAAGCAACTTGaacgcacatttaaaaaatcattctgGAGATTATCCATTCACTTGCGAAATCTGCGAAAGGAGATTCAATACACAGTCTGGCTTAGATGTTCATAAATTTGATCATACGGGGGGAAAACCGTTCTCATGTGACGAATGCAATAAACAGTATACAACAAAAAGTGCTTTAAGACTTCACTCAAGAATTCATACCGGAGATTATAGGTACGCATGCGATGTATGCAGCAAACGATTCATACAAAAAGAGGTCTTAAGGCAACACATGCGCGTGCACACAGGTGAGAAGCCTTACACCTGTGAAATATGCCAAAGGAAGTTTCCATATAGATGTGGCTTAAAGAGTCATTTGTTAGTTATACATAATCAAGTCATGAACAACCCCACCAAACCTATTCCGACCTTTATATGTGAACACTGCAACAAGCAATTTTCAAATAAACCCGCATTAAAAAGACATGTACTAACACACACTGTAGGAAAACAATTTTGTTGCGATGTTTGTGGCAAACGTTTCGCCATAAAGAGGACTTTAGTTAGACACATGGATAAACACGCCCAGAAGAAAGACGGAGAGAAAGAACCTGAAGACCCAAAACCATACATGTGTGAAATATGTAGCAAACGGTTTTCACTAAAGAGCACCTTAagaaaccatagagaaatacatAATGAAGAAAGACCTTTTGAGTGCGAAGTGTGTCATAAGAAATTTAGAATGAAGAAATGTTTGCAAGATCACATGAAGGTGCATGAAGactttaaacaacattcatGTGAAGTGTGCGGGCAGCAATTCAGACATAAGTCTGCCTTGACAGTTCATATCAGACGAATGCACTCAGAAAACAGGCCACATATTTGCGATGTTTGTAAGAAGGCTTATCCAGTTCTTGCCGAGTTAAAAGCGCATTATCGAGTACACACTGGTGAGAGACCGTATGCTTGCGAAGTATGCTACAAGAAATTTCCACGACATGATGGAGTCCGGAGACATCTTATACGAGTTCATCATGAGAAAccttcaaaatatattaaactaaaAGAATTTAATAATCCTAACTGA
Protein Sequence: MEELHSCSCCLERPPEKGLKTLYKHLGRTEIYYDMLRDCFDINLSLGNDECGICEVCVGRLRDASDFKLQVQRSQAQLRARLKGVLTASDKLKIKLERASGDVAIIPGEIKLEKSEVEMADGEVVSVAIYGGPPAPSAQPVPTASRISFKPAPSVTNLDDSDPTPPNRGTIHTCDICHKSFDHQARLKVHRRSHTGEKPYSCKVCNKKFAQKSNLNAHFAYHMGDYKFSCELCDTRFTQKSHWVKHMLIHTGEKPYACDICNKKFRQKGNLNVHKKIHLKNDIEPGEITAHKRESDEFKDRVPTEFFTCDICKKQFAEKSNLNAHLKNHSGDYPFTCEICERRFNTQSGLDVHKFDHTGGKPFSCDECNKQYTTKSALRLHSRIHTGDYRYACDVCSKRFIQKEVLRQHMRVHTGEKPYTCEICQRKFPYRCGLKSHLLVIHNQVMNNPTKPIPTFICEHCNKQFSNKPALKRHVLTHTVGKQFCCDVCGKRFAIKRTLVRHMDKHAQKKDGEKEPEDPKPYMCEICSKRFSLKSTLRNHREIHNEERPFECEVCHKKFRMKKCLQDHMKVHEDFKQHSCEVCGQQFRHKSALTVHIRRMHSENRPHICDVCKKAYPVLAELKAHYRVHTGERPYACEVCYKKFPRHDGVRRHLIRVHHEKPSKYIKLKEFNNPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00871547;
90% Identity: iTF_00409506; iTF_00412731;
80% Identity: -