Cstr021178.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387699.1:5197606-5209525[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00022 0.013 16.5 7.0 1 23 173 195 173 195 0.98 2 15 3.1e-06 0.00019 22.3 1.6 1 23 201 223 201 223 0.95 3 15 3.1e-05 0.002 19.1 2.9 1 23 229 251 229 251 0.97 4 15 7.8e-07 4.8e-05 24.2 1.0 1 23 257 279 257 279 0.97 5 15 2e-06 0.00012 22.9 0.9 1 23 308 330 308 330 0.98 6 15 0.00051 0.032 15.3 0.7 1 23 336 358 336 358 0.92 7 15 1.1e-05 0.0007 20.5 1.2 1 23 364 386 364 386 0.98 8 15 6.2e-06 0.00039 21.3 0.4 1 23 392 414 392 414 0.98 9 15 0.00034 0.021 15.8 1.5 1 23 420 443 420 443 0.97 10 15 2.1e-06 0.00013 22.8 1.9 1 23 457 479 457 479 0.98 11 15 7.3e-05 0.0045 18.0 2.1 1 23 485 507 485 507 0.97 12 15 1.7e-05 0.001 20.0 1.3 1 23 523 545 523 545 0.97 13 15 0.00014 0.0086 17.1 6.2 1 23 551 573 551 573 0.98 14 15 4.1e-06 0.00025 21.9 2.8 1 23 579 602 579 602 0.97 15 15 0.00033 0.02 15.9 0.1 1 23 608 630 608 630 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAGTTGCACTCTTGTAGCTGCTGCCTGGTGCGCCCTCCGGAAAAGGGGCTCAAGACTCTGTATAAACACCTCGGCAGAACAGAGATATATTACGACATGCTCAGAGACTGCTTCGATATTAATCTAAGCTTAGGAAATGACGAGTGCGGAATCTGCGAGGTGTGCGTGGTGCGGCTGCGGGACGCGAGCGACTTCAAGCTGCAAGTGCAGCGCAGCCAGGCCGAGCTGCGCGCGCGGCTCAAGGGAGTGCTCACTGCCAGTGACAAGTTGAAAATCAAGCTAGAGAGAGCGTCTCGAGACGTCGCCATCATTCCAGGGGAAATCAAGCTGGAAAAGTCCGAGGTGGAGATGGCTGATGGTGAGGTCGTATCAGTGGCAATATACGGCGGGCCGCCTGCGCCCTCCGCCCAACCCGTGCCCACCGCGTCCCGCATCTCCTTCAAGCCGGCGCCCACCGTCACCGACCTCGACGACTCAGACCCCACTCCGACTCCCAACCGCGGCACCATACACACCTGCGACATATGCCACAAGTCGTTCGACCACCAAGCCCGACTAAAGGTCCACAGGCGGTCTCATACTGGAGAAAAACCTTACTCGTGCAAAGTATGCAACAAAAAATTCGCACAAAAGAGCAACTTAAACGCTCATTTCGCATACCACATGGGAGACTACAAATTTTCCTGCGACTTATGCGACACGCGATTCACCCAAAAATCCCACTGGGTAAAACATATGTTTATACACACTGGCGAGAAACCGTACGCTTGTGATATATGTAACAAAAAATTTAGACAAAAAGGAAACTTAAATGTTCACAAAAAAATTCACTTGAAAAATGATATAGAGCCTGGAGAAATAACTGCGCACAAGAGAGAGTCAGATGAATTTAAAGATCGAGTACCCACTGAATTTTTCACATGTGATATATGCAAAAAACAGTTTGCAGAAAAAAGCAACTTGAACGCACATTTAAAAAATCACTCTGGAGATTATCCATTTACTTGCGAAATCTGCGAAAGGAGATTTAATACACAATCTGGTTTGGATGTTCATAAATTTGATCACACGGGAGGGAAACCGTTTTCATGTGAAGAATGCAATAAACAGTATACAACAAAAAGTGCTTTAAGACTTCACTCAAGAATTCATACTGGAGATTATAGGTACGCATGCGATGTATGTAGCAAACGATTCATACAAAAAGAGGTCTTAAGGCAACACATGCGCGTGCACACGGGTGAGAAACCTTACACCTGTGAGATATGCCAAAGAAAGTTTCCATATAGATGTGGCTTAAAGAGTCATTTGTTAGTTATACATAATCAAGTCATGAACAACCCCACTAAACCTATTCCAACCTATATATGTGAACACTGCAACAAGCAATTCTCAAATAAACCCGCATTAAAAAGACATGTACTAACACACACTGTGGGAAAACAATTTTGCTGCGATGTTTGTGGCAAACGTTTCGCCATAAAGAGGACTTTAGTTAGACACATGGATAAACACGCCCAGAAGAAAGACGGAGAAAAGGAACCAGAAGACCCAAAACCATATATGTGTGAAATATGTAGCAAACGATTTTCACTAAAGAGCACCTTAAGAAACCACAGAGAAATACATAATGAAGAAAGACCTTTTGAGTGCGAAGTGTGTCACAAGAAATTCAGAATGAAGAAGTGTTTGCAAGACCACATGAAAGTGCATGAGGACTTTAAACAACATTCATGTGAAGTTTGCGGGCAGCAATTCAGACACAAGTCTGCCTTGACGGTTCATATCAGACGAATGCACTCAGAAAACAGACCACATATTTGTGATGTTTGTAAGAAGGCTTATCCAGTTCTTGCTGAGTTAAAAGCGCATTATCGGGTGCACACTGGTGAGAGACCGTATGCTTGCGAAGCCGCCGAAGATGCGACGGCCACAGAGACGCAGGGCCCCTTACCCGAGCCCCTACCGTCAGCAAAGAAGAAAAATACCACATACGCAGCTACAGCATCACAGCCCACACAGAAGAAACCTGAGGATGCCCCCGCTGCACAACGACAACCTCAACAGCCACCACCCAAGAAGAAGATCAAGTACCCCAGCATCGTGGCGCCGGTGCTACCAAACTGGGCGGCGTTGACGAGAGACATAGGAACCAAACTGGGCCGAGCCATCAACGCCAAGCCGGTGGAGCGCGGGTTACGGTTCGAACCCAAGACTGAGGAAGAATACAAGGCGGTCTACAACCATCTGGACTTCGAGGCCTCCCAGCAGGCACGCCATTAG
- Protein Sequence
- MEELHSCSCCLVRPPEKGLKTLYKHLGRTEIYYDMLRDCFDINLSLGNDECGICEVCVVRLRDASDFKLQVQRSQAELRARLKGVLTASDKLKIKLERASRDVAIIPGEIKLEKSEVEMADGEVVSVAIYGGPPAPSAQPVPTASRISFKPAPTVTDLDDSDPTPTPNRGTIHTCDICHKSFDHQARLKVHRRSHTGEKPYSCKVCNKKFAQKSNLNAHFAYHMGDYKFSCDLCDTRFTQKSHWVKHMFIHTGEKPYACDICNKKFRQKGNLNVHKKIHLKNDIEPGEITAHKRESDEFKDRVPTEFFTCDICKKQFAEKSNLNAHLKNHSGDYPFTCEICERRFNTQSGLDVHKFDHTGGKPFSCEECNKQYTTKSALRLHSRIHTGDYRYACDVCSKRFIQKEVLRQHMRVHTGEKPYTCEICQRKFPYRCGLKSHLLVIHNQVMNNPTKPIPTYICEHCNKQFSNKPALKRHVLTHTVGKQFCCDVCGKRFAIKRTLVRHMDKHAQKKDGEKEPEDPKPYMCEICSKRFSLKSTLRNHREIHNEERPFECEVCHKKFRMKKCLQDHMKVHEDFKQHSCEVCGQQFRHKSALTVHIRRMHSENRPHICDVCKKAYPVLAELKAHYRVHTGERPYACEAAEDATATETQGPLPEPLPSAKKKNTTYAATASQPTQKKPEDAPAAQRQPQQPPPKKKIKYPSIVAPVLPNWAALTRDIGTKLGRAINAKPVERGLRFEPKTEEEYKAVYNHLDFEASQQARH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00871547;
- 90% Identity
- iTF_00411690;
- 80% Identity
- -