Basic Information

Insect: Cydia amplana
Gene Symbol: -
Assembly: GCA_948474715.1
Location: OX419679.1:5437167-5442378[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0002 0.011 16.7 7.0 1 23 173 195 173 195 0.98

2 16 2.8e-06 0.00015 22.4 1.6 1 23 201 223 201 223 0.95

3 16 6.9e-06 0.00038 21.2 2.2 1 23 229 251 229 251 0.98

4 16 7.1e-07 3.8e-05 24.3 1.0 1 23 257 279 257 279 0.97

5 16 1.8e-06 9.8e-05 23.1 0.9 1 23 308 330 308 330 0.98

6 16 0.00046 0.025 15.5 0.7 1 23 336 358 336 358 0.92

7 16 1.1e-05 0.00058 20.6 1.2 1 23 364 386 364 386 0.98

8 16 5.7e-06 0.00031 21.5 0.4 1 23 392 414 392 414 0.98

9 16 0.00031 0.017 16.0 1.5 1 23 420 443 420 443 0.97

10 16 1.9e-06 0.0001 23.0 1.9 1 23 457 479 457 479 0.98

11 16 6.7e-05 0.0036 18.1 2.1 1 23 485 507 485 507 0.97

12 16 1.5e-05 0.00083 20.2 1.3 1 23 523 545 523 545 0.97

13 16 0.00013 0.0069 17.3 6.2 1 23 551 573 551 573 0.98

14 16 3.8e-06 0.0002 22.1 2.8 1 23 579 602 579 602 0.97

15 16 0.0003 0.016 16.1 0.1 1 23 608 630 608 630 0.97

16 16 0.00066 0.036 15.0 0.8 1 23 636 659 636 659 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0002	0.011	16.7	7.0	1	23	173	195	173	195	0.98
2	16	2.8e-06	0.00015	22.4	1.6	1	23	201	223	201	223	0.95
3	16	6.9e-06	0.00038	21.2	2.2	1	23	229	251	229	251	0.98
4	16	7.1e-07	3.8e-05	24.3	1.0	1	23	257	279	257	279	0.97
5	16	1.8e-06	9.8e-05	23.1	0.9	1	23	308	330	308	330	0.98
6	16	0.00046	0.025	15.5	0.7	1	23	336	358	336	358	0.92
7	16	1.1e-05	0.00058	20.6	1.2	1	23	364	386	364	386	0.98
8	16	5.7e-06	0.00031	21.5	0.4	1	23	392	414	392	414	0.98
9	16	0.00031	0.017	16.0	1.5	1	23	420	443	420	443	0.97
10	16	1.9e-06	0.0001	23.0	1.9	1	23	457	479	457	479	0.98
11	16	6.7e-05	0.0036	18.1	2.1	1	23	485	507	485	507	0.97
12	16	1.5e-05	0.00083	20.2	1.3	1	23	523	545	523	545	0.97
13	16	0.00013	0.0069	17.3	6.2	1	23	551	573	551	573	0.98
14	16	3.8e-06	0.0002	22.1	2.8	1	23	579	602	579	602	0.97
15	16	0.0003	0.016	16.1	0.1	1	23	608	630	608	630	0.97
16	16	0.00066	0.036	15.0	0.8	1	23	636	659	636	659	0.96

Sequence Information

Coding Sequence: ATGGAGGATTTGCACTCGTGTAGCTGCTGCCTGGTGCGCCCTCCGGAAAAGGGGCTCAAAACACTGTATAAACACCTCGGCAGAACAGAGATATATTACGACATGCTTCGAGACTGCTTCGATATTAATCTAAGCTTAGGAAACGATGAGTGCGGGATCTGCGAGGTGTGCGTGGGGCGGCTGCGGAACGCAAGCGACTTCAAGCTGCAAGTGCAGCGCAGCCAGGCCGAGCTGCGCGCGCGGCTCAAGGGAGTGCTCACTGCCAGTGACAAGTTGAAAATCAAGCTAGAAAAAGCTTCTGGAGACGTCGCCATAATTCCTGGTGAAGTCAAGCTGGAAAAGTCCGAGGTGGAGATGGCTGATGGTGAGGTCGTATCAGTGGCAATATACGGCGGGCCGCCAGCGCCCTCAGCCCAGCCCGTGCCCACCGCGTCACGCATCTCCTTCAAGCCGGCGCCCACCGTCACCAACCTAGACGACTCCGACCCCACCCCGACCCCCAACCGCGGCACCATACACACCTGCGACATATGCCACAAGTCGTTCGACCACCAAGCCCGTCTAAAGGTCCACAGGCGGTCTCACACTGGAGAAAAACCTTACTCGTGCAAAGTATGCAACAAAAAATTCGCACAAAAGAGCAACTTAAACGCTCATTTCGCATACCACATGGGAGACTACAAATTTTCCTGCGACTTATGCGACACGCGATTCACCCAAAAGTCTCACTGGGTTAAACATATGCTTATACACACTGGCGAGAAACCGTATGCGTGTGATATATGCAATAAGAAATTTAGACAAAAAGGGAATTTAAATGTTCACAAAAAAATTCATTTGAAAAATGATATAGAGCCTGGAGAAATAACTGCGTATAAGAGAGAGTCAGATGAATTTAAAGATCGAGTACACGCTGAATTTTTCACATGTGATATATGCAAAAAACAATTTGCAGAAAAAAGCAACTTGAACGCACATTTAAAAAATCACTCTGGAGATTATCCATTCACTTGCGAAATCTGCGAAAGGAGGTTTAATACACAGTCTGGCTTGGACGTTCATAAATTTGATCACACGGGAGGGAAACCTTTTTCATGTGATGAATGCAATAAACAGTATACAACAAAAAGTGCTTTAAGACTTCACTCAAGAATTCACACCGGAGATTATAGGTACGCATGTGACGTATGCAGCAAACGATTCATACAAAAAGAGGTCTTAAGGCAACACATGCGCGTGCATACAGGTGAGAAACCTTACACCTGTGAGATATGCCAAAGAAAGTTTCCATATAGATGTGGCTTAAAGAGTCATTTGTTAGTTATACATAATCAAGTCATGAACAACCCCACTAAACCTATTCCGACCTATATATGTGAACACTGCAACAAGCAATTCTCAAATAAACCCGCATTAAAAAGACATGTACTAACACACACTGTCGGAAAACAATTTTGCTGCGATGTTTGTGGCAAACGTTTCGCCATAAAGAGAACTTTAGTTAGACACATGGATAAACACGCCCAGAAGAAAGACGGAGAGAAGGAACCGGAAGACCCAAAACCATATATGTGTGAAATATGCAGCAAACGGTTCTCACTAAAGAGCACCTTAAGAAACCATAGAGAAATACATAATGAAGAAAGGCCTTTTGAGTGCGAAGTGTGTCACAAGAAATTCAGAATGAAGAAGTGTTTGCAAGACCATATGAAAGTACATGAGGACTTTAAACAACATTCATGTGAAGTGTGCGGCCAGCAATTCAGACATAAGTCTGCCTTGACGGTTCATATCAGACGAATGCACTCGGAAAACAGACCACATATTTGCGATGTTTGTAAGAAGGCTTATCCAGTTCTTGCCGAGTTAAAAGCGCATTATCGGGTACACACCGGTGAGAGACCGTATGCTTGCGAAGTATGCTACAAGAAATTCCCACGACATGATGGGGTCCGCAGACATCTTATACGAGTTCATAATGAGAAACCATCTAAATACATTAAATTGAAAGAATTTAATAATCCTAACTGA
Protein Sequence: MEDLHSCSCCLVRPPEKGLKTLYKHLGRTEIYYDMLRDCFDINLSLGNDECGICEVCVGRLRNASDFKLQVQRSQAELRARLKGVLTASDKLKIKLEKASGDVAIIPGEVKLEKSEVEMADGEVVSVAIYGGPPAPSAQPVPTASRISFKPAPTVTNLDDSDPTPTPNRGTIHTCDICHKSFDHQARLKVHRRSHTGEKPYSCKVCNKKFAQKSNLNAHFAYHMGDYKFSCDLCDTRFTQKSHWVKHMLIHTGEKPYACDICNKKFRQKGNLNVHKKIHLKNDIEPGEITAYKRESDEFKDRVHAEFFTCDICKKQFAEKSNLNAHLKNHSGDYPFTCEICERRFNTQSGLDVHKFDHTGGKPFSCDECNKQYTTKSALRLHSRIHTGDYRYACDVCSKRFIQKEVLRQHMRVHTGEKPYTCEICQRKFPYRCGLKSHLLVIHNQVMNNPTKPIPTYICEHCNKQFSNKPALKRHVLTHTVGKQFCCDVCGKRFAIKRTLVRHMDKHAQKKDGEKEPEDPKPYMCEICSKRFSLKSTLRNHREIHNEERPFECEVCHKKFRMKKCLQDHMKVHEDFKQHSCEVCGQQFRHKSALTVHIRRMHSENRPHICDVCKKAYPVLAELKAHYRVHTGERPYACEVCYKKFPRHDGVRRHLIRVHNEKPSKYIKLKEFNNPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00871547;
90% Identity: iTF_00411690;
80% Identity: -