Cpom001643.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- Gcfc2
- Assembly
- GCA_033807575.1
- Location
- CM066344.1:27687065-27700388[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-12 1.9e-07 32.2 0.8 4 96 267 332 264 348 0.78 2 2 3.8e-05 0.84 10.5 0.0 127 190 372 435 352 440 0.75
Sequence Information
- Coding Sequence
- ATGGTTGATTGTAGTCTTGATGGAAACACTGATTttgATGGCACGGAGGCGGGGCTGAACCCGTTCGCGgtagcgccgccgccgccgcggctgCAGGAGGCGCCGGCGCACCTGCGGCCGCTTGCCGCGCCCGCGCAGCCGCCGCCCGCCACGCCGCAGGCGCTTCTCGACGCGCTCACCGACAGGTTGCAAGAATTAGAGACGGACCGGTCTTCGACCCTGACGAAGAAGGAAACGTGCTCGGCGCGGCTGGAGGCGGCAGCCGCGACGCGCTCGGCGTGCGGCGCGCGCACCGGCGCGCTCGACGCGGCCTATCGCCGCGCGCAGGCTGCTCGGGGTTTCCTCACCGACCTCATCGAATGCCTGGATGAAAAGCTGCCGCTGCTGGAGGCGCTCGAGGCGCGCGCGCTGGCGCTGCACCGTCGCCGCTGCGAGTTCCTCACGGAGCGGCGGCGCGCCGACGTGCAGGACCAGGCGCTCGACACCCTCGCGCCCGGTAACTACGCTCCCCTGCTTGTAGCCTCTCGTGCGGGCGCTCTGAAGCCAGCTGACTCTGAGGAAAAGATCCGGCGCACGGCGGAACGCGAGggccggcggcgcgcgcggcgcctcAAGCgcgaggcggcggcggcggcggccggcgCGCCCCCGCCGCGCTCGCACCGCGACGGCGACTCCAGCGACGACGACCTGCCGCCCAGCGAGGAACACTACTACCGCCAGGAGAAAGAGAGTAtccgcgcggcggcggcggcggtgttCGCGGACGCGCTGCCTGCGTGGCGCAGCGCACGCGGCGTGTGCGCCCGGCTGGCGCGGTGGCGGCGCCGCGACCCCACACTCTACGCCGACGCCTACGTGGCCGACTGCCTGCCCAAACTGATCGCGCCCTACGTCAGGCATCAACTTATTCTTTGGAATCCACTCGCAGATGAAGACAATGAAGACTATGAAAGGATGGATTGGTACAAGTGGTTAATGATGTACGGAGTTCGAAACGAGAAGCTGTCGAGCGAGTCTGAACAGTCAAGCGACGAGgagagcggcggcggcggcgcggtgaCCGTGAGCGAGGACGGCGTGCGCGCCGACCCCGACCTGATGCTCGTGCCCGCCGTCGTCTGCGGGGTCGTGCTGCCCAAGCTCGCAGAGGTTGTTGACGCTGCATGGGACcctgtgtgcgtgcgtgcgtgcgtgcgccTGCGGCAGCTGCTCGTGCGCGCGTGCGCGCttcccggcgccgcgcccgctgTGGCCCGCGTGGcgtcggcggcgcgcgcgcgcctACAGCGAGCGCTCAACGCCGACGTCTTCCTGCCGCCGCTGCCCATCAACCAGGCTCTAGATGGCGCGAGCGGCGCGTTCTGGCGGCGCTGCTTgggagcgggcgtgcggctgctgcgcgccgcgctggcgctcacgtcgccgccgccgctgttGCGCGCCGATGACGTTGCGCTCTCCCTCATAGAGACGCTGAGCACAGCAGCGGGCGCGTGCGCtgggccggcggcggcggcggcggccgcggcgcTGGCTGAGACGCTGCCGCGCGGCACGGGCGagctgcgcgcgcgcgcgctgcgccgccTCGCGCGCCTCGCCGCGCTGGCCATCAACCGCCTCGACCAAGCCAACCCGCTCCACATGTAA
- Protein Sequence
- MVDCSLDGNTDFDGTEAGLNPFAVAPPPPRLQEAPAHLRPLAAPAQPPPATPQALLDALTDRLQELETDRSSTLTKKETCSARLEAAAATRSACGARTGALDAAYRRAQAARGFLTDLIECLDEKLPLLEALEARALALHRRRCEFLTERRRADVQDQALDTLAPGNYAPLLVASRAGALKPADSEEKIRRTAEREGRRRARRLKREAAAAAAGAPPPRSHRDGDSSDDDLPPSEEHYYRQEKESIRAAAAAVFADALPAWRSARGVCARLARWRRRDPTLYADAYVADCLPKLIAPYVRHQLILWNPLADEDNEDYERMDWYKWLMMYGVRNEKLSSESEQSSDEESGGGGAVTVSEDGVRADPDLMLVPAVVCGVVLPKLAEVVDAAWDPVCVRACVRLRQLLVRACALPGAAPAVARVASAARARLQRALNADVFLPPLPINQALDGASGAFWRRCLGAGVRLLRAALALTSPPPLLRADDVALSLIETLSTAAGACAGPAAAAAAAALAETLPRGTGELRARALRRLARLAALAINRLDQANPLHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00289629;
- 90% Identity
- iTF_01133741;
- 80% Identity
- -