Ccan004942.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- GCFC2
- Assembly
- GCA_951800055.1
- Location
- OX637471.1:20946518-20965955[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-11 5.2e-07 30.7 0.8 4 97 280 346 277 360 0.79 2 2 6.9e-05 0.56 10.9 0.0 126 189 387 450 377 454 0.68
Sequence Information
- Coding Sequence
- ATGGAAATTGCAAGCTTCGTATTAATCAACCAGACTCGCAATCTCGTCCGTTTAAATCTGAGCCTCCTTCCCGAACTGGACAATAATGTACTGTTTTGTGGCTCATCAGAGGGCGCGGAGGCGCAGCTGAACCCGTTCGCGGTGGCGCCCCCGCCGCCGCGGCTGCAGGAGGCGCCGGCGCACCTGCGCCCGCTGGCGGCGCCCTCGGCGCCGCACCCCTCCACGCCGCAAGGCCTACTCGACGCCCTCACTGAGAGGTTGCAAGAGTTGGAGACGGATCGCGAGAACACGCTGGCTAAGAAGGAGTCGTGGCAACAAcggctggcggcggcggcggcggctcgcGAGGAGCGCGCCGCGCGCACCGGCGCGCTCGACGCGGCGTACCGGCGCGCGCAGGCCGCGCGCGGCTTCCTCACCGACCTCATCGAGTGCTTGGATGAAAAGCTGCCGGCGCTGGAGGCGCTggaggcgcgcgcgctggcGCTGCACCGCCGCCGCTGCTCGTTCCTCACCGAGCGGCGCCGCGCAGACGTGCAGGACCAGGCGCTCGACACACTCGCTTCAGGTCGCGCGGGTAAGACAGCGGATTCCGAAGAGAAGATCCGGCGCACAGCGGAGCGCGaggggcggcggcgcgcgcggcggctggcgcgcgaggcggcggcggccgcggccggCGCGCCCATGCCGAGGTCGCACCGCGACGGAGACTCCAGCGATGACGAACTGCCGCCCAGCGAGCAACACTACTACCGACAGGAGAAAGAGAGCatccgcacggcggcgggcgGTCTGTTCGCGGACGCGCTGCCGGCGTGGCGCAGCGCGCGCGGCGTGTGCGCGCGGCTGGCGCGCTGGCGGCGCCGCGACCCCGCGCTCTACGCCGACGCGTACGTACCCGACTGCCTGCCCAAGCTGCTCGCGCCGTACGTGCGCCACCAGCTTATTCTGTGGAATCCACTCGCAGACGAAGACAATGAAGATTACGAAAGGATGGACTGGTACAAATGGCTGATGATGTACGGGGTGCGCGCTGAGAAGCTGTCGAGCGAGTCGGAGCAGTCGAGCGAGGATgagggcgcgggcgcgggcgcggcgggggGCGGTGCGGTGAGCGAGGGGGGCGTGCGCGCCGACCCCGACCTGCTGCTGGTGCCCGCCGTCGTCAACGGCGTCGTGCTGCCCAAGCTCGCAGAGCTGGTGGAGTGCGCGTGGGACCCGGTGTGCGTGCGCGCGTGCGTGCGGCTGCGGCAGCTGCTGGTGCGCGCGTGCGCGCTGCCGGGCGCCGCGCCCGCGGCGGCGCGCGTGGCGGCCGCCGCGAGGGCCGCGCTGCAGCGCGCGCTGCACCACGACGTCTTCCTGCCGCCGCTGCCGCTCAACCAGAGTCTGGAAGGGGCGCACGGCTTGTTCTGGCGGCGCTGCCTGGGCGCCGGCTTGCGACTGCTTCGCGCTGCGCTCTCGCtcaccgcgccgccgccgctgctgcGTGCAGACGACGTAGCGTTGCAGCTTATAGAGACGCTGAGCACTGGCGCGGGCGCATGCGcggggccggcggcggcggcggcggcggccgcgctGGCCGAGACGCTGccgcgcggcgcgggcgagctgcgcgcgcgcgcgctgcgccGCCTGGCGCGCCTCGCGCACCTCGCGCTCGATCGCCTCGACCAGGCCAACCCGCTGCACATGAAAGCAGTGGAGCAAGCCAAAGCAGTAATAGCCGAGGCGAAGGCGGTGGAGTGA
- Protein Sequence
- MEIASFVLINQTRNLVRLNLSLLPELDNNVLFCGSSEGAEAQLNPFAVAPPPPRLQEAPAHLRPLAAPSAPHPSTPQGLLDALTERLQELETDRENTLAKKESWQQRLAAAAAAREERAARTGALDAAYRRAQAARGFLTDLIECLDEKLPALEALEARALALHRRRCSFLTERRRADVQDQALDTLASGRAGKTADSEEKIRRTAEREGRRRARRLAREAAAAAAGAPMPRSHRDGDSSDDELPPSEQHYYRQEKESIRTAAGGLFADALPAWRSARGVCARLARWRRRDPALYADAYVPDCLPKLLAPYVRHQLILWNPLADEDNEDYERMDWYKWLMMYGVRAEKLSSESEQSSEDEGAGAGAAGGGAVSEGGVRADPDLLLVPAVVNGVVLPKLAELVECAWDPVCVRACVRLRQLLVRACALPGAAPAAARVAAAARAALQRALHHDVFLPPLPLNQSLEGAHGLFWRRCLGAGLRLLRAALSLTAPPPLLRADDVALQLIETLSTGAGACAGPAAAAAAAALAETLPRGAGELRARALRRLARLAHLALDRLDQANPLHMKAVEQAKAVIAEAKAVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772897; iTF_00411477; iTF_01133741;
- 90% Identity
- -
- 80% Identity
- -