Cpom014173.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- cheC
- Assembly
- GCA_033807575.1
- Location
- CM066351.1:6379495-6381585[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.5e-11 6.6e-08 33.4 0.0 1 41 15 56 15 60 0.90
Sequence Information
- Coding Sequence
- ATGGTGAAAACGTATAAGAGAAAAACAAATAGAGCAGAATGGTCAGAGGAAGCTATGAAAAATGCGGTGGATGCTGTACTAGAAGGAAAAATGGGTTACCTGTCGGCAGCAAAGACATTTTCTGTCCCTCAGACGACTTTAGAAAGAAAAGTCAAAGTAGTTAGAGAGAAGTTGTCAGACGGTACTTCCACTAGCTATGAATTGAAAGTTCGTTTAGGCCCTAAAGATACGGTTTTTTCTAAAGAAGAGGAAAAAGAgctgtataattatatactagaCATGGAAAGTAGACTGTATGGTCTTACAATAAAAGACTTAAGGGGTCTAGCGTACAGTTTGgcggttaaaaataataaacaacattCATTTAATAACGAGAAAAGAGAAGCTGGGAAAGATTGGGCACACAACTTTCTCAAGAGACATCCTGAATTGTCTATTCGACAGCCTGAGAGTACTTCAGCAGCTCGTGCTGCAGGATTTAACAAGCAAGTTGTAGATCAGTTTTATAACTTTTTGGGGAACGTTtatgatgaaaataatttaactcCTGACAGAATTTTCAACTGTGACGAGACAGGTATTTCTATTGTTCCAAAAACCAAATCAAAAATAATAGCCAAAAGAGGGCGAAAGCAAGTCGGAGCGATCACTTCTGCAGAAAGAGGGACAACAATAACTGTTGAAATCTGTTTCAGTGCAAGTGGCCTATACATGCCACCCATGATGGTATTTCCTCGAAAGCGTATGGACCCGCAATTAATGCTAAATGCTGCACCAGGATCTTGGGGAGTATGCAGTGATTCGGGCTGGATGACAACGGAACTCTTTGCTGGCTGGTTTAAGAAATTCGTGGAATTTAGTGGAGCAACAACAGAACGACCTGTCCTGCTGTTGTTGGATGGACATAGTACTCACACTCAAAACATTGATCTCATCAATGAAGCGCGATCTCATGGAGTAATCATTCTATGTTTTCCTCCACACACTACTCACCGACTTCAAGTTGCTGATGTTGCATATATGAGGCCACTCAGCACGTATTATGACCATCAAATCACAGCATGGCTACGCAGTAATCCGGGGATGATCGTCACGGTGCGGCAAGTCGCAGAAATTTTTGGAAAGGCTTTTATACAAGCATCAACGATGTCTACAGCAGTAAATGGATTTAAAAAGTGCGGAATTTGGCCATATGACCCCACAGTTTTTACTGAAACTGACTTCGCTCCATCTCTAACCACAGACATCCCTCAACCAGAGCCGTCACCAGTTACTGAAACACCAATAACGGTTTCTGCAGAATCCAACAACGAAATACCAATGGAGATCGGTCTCACGGGAGCGACGTCATCGACCACTGTATCAGACAATGCCATACTAACTACTACTGTCGCGGCTTCCACAGCCGAATCCTTGTGTGTGTCTGCGTCCTCTGTGGATTCTCAAACAGAATCAAGCACCGTTTTGGATGTATCTCAGAGTTCAGCTATTTTACCAGTATCATCAGCACCTGAAGATTTACAGTTGCAACCCTCCGAAGTTGAAATGGAACCATTGATTCAAACAGCAGCAAAGTCACCAGAACCTGGATGTTCTACTTATAGACCAAGTACGCCACGAGAATCTAGTTTCATTGTTGCTAGTCCCCAACAAGTTATGCCTTTTCCTGCAACAAGGAAAATTACAAGAGCACCAACAAAGAGAGGAAAAACCGCTATTATTACCTCATCGCCCTACAAAAATGAGttagaagataaaataaaaaagaaacaagagGTGGTTGACGCTAAAGAGAAAAGGAAGGCTATAAGAGAATTaaagaaaactcaaaaaaataccgttgctaataaaaataaagtgaccaaaaagaaaaaaaatactaaagctACTCGAAAATCGACTGTAGGATCGGAAAATAGTGGTAGTGAGTCAGAAAATCCTCCGTGTTTATATTGTCACGGTCTCTATTTAGAGTCCACAGAAGGCTGGGTGGCGTGTTCGGCATGCCGAAAATGGGCACATTGTAGCTGTGCAGGTGTTGAAGACGAGGATGAAGAGACTGCCTTTAAATGTGAAATTTGTCCATAG
- Protein Sequence
- MVKTYKRKTNRAEWSEEAMKNAVDAVLEGKMGYLSAAKTFSVPQTTLERKVKVVREKLSDGTSTSYELKVRLGPKDTVFSKEEEKELYNYILDMESRLYGLTIKDLRGLAYSLAVKNNKQHSFNNEKREAGKDWAHNFLKRHPELSIRQPESTSAARAAGFNKQVVDQFYNFLGNVYDENNLTPDRIFNCDETGISIVPKTKSKIIAKRGRKQVGAITSAERGTTITVEICFSASGLYMPPMMVFPRKRMDPQLMLNAAPGSWGVCSDSGWMTTELFAGWFKKFVEFSGATTERPVLLLLDGHSTHTQNIDLINEARSHGVIILCFPPHTTHRLQVADVAYMRPLSTYYDHQITAWLRSNPGMIVTVRQVAEIFGKAFIQASTMSTAVNGFKKCGIWPYDPTVFTETDFAPSLTTDIPQPEPSPVTETPITVSAESNNEIPMEIGLTGATSSTTVSDNAILTTTVAASTAESLCVSASSVDSQTESSTVLDVSQSSAILPVSSAPEDLQLQPSEVEMEPLIQTAAKSPEPGCSTYRPSTPRESSFIVASPQQVMPFPATRKITRAPTKRGKTAIITSSPYKNELEDKIKKKQEVVDAKEKRKAIRELKKTQKNTVANKNKVTKKKKNTKATRKSTVGSENSGSESENPPCLYCHGLYLESTEGWVACSACRKWAHCSCAGVEDEDEETAFKCEICP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00654210;
- 90% Identity
- iTF_00411366; iTF_00411369; iTF_00411370; iTF_00411371; iTF_00654187; iTF_00411372; iTF_00654188; iTF_00871231; iTF_00654210; iTF_00008882;
- 80% Identity
- -