Cpom003749.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- cheC
- Assembly
- GCA_033807575.1
- Location
- CM066345.1:11889212-11891302[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.2e-11 7.1e-08 33.3 0.0 1 41 15 56 15 60 0.90
Sequence Information
- Coding Sequence
- ATGGTGAAAACGTATAAGAGAAAAACAAATAGAGCAGAATGGTCAGAGGAAGCTATGAAAAATGCGGTGGAtgctgtaatagaaggaaaaatgggTTATCTGTCGGCAGCAAAGACATTTTCTGTCCCTCAGACGACTTTAGAAAGAAAAGTCAAAGTAGTTAGAGAGAAGTTGTCAGACGGTACTTCCACTAGCTATGAATTGAAAGTTCGTTTAGGCCCTAAAGATACGGTTTTTTCTAAAGAAGAGGAAAAAGAgctgtataattatatactagaCATGGAAAGTAGACTGTATGGTCTTACAATAAAAGACTTAAGGGGTCTAGCGTACAGTTTGgcggttaaaaataataaacaacatCCATTTAATAACGAGAAAAGAGAAGCTGGGAATGATTGGGCACACAACTTTCTCAAGAGACATCCTGAATTGTCTATTCGACAGCCTGAGAGTACTTCAGCAGCTCGTGCTGCAGGATTTAACAAGCAAGTTGTAGATCAGTTTTATAACTTTTTGGGGAACGTTtatgatgaaaataatttaactcCTGACAGAATTTTCAACTGTGACGAGACAGGTATTTCTATTGTTCCAAAAACCAAATCAAAAATAATAGCCAAAAGAGGGCAAAAGCAAGTCGGAGCGATCACTTCTGCAGAAAGAGGAACAACAATAACTGTTGAAATCTGTTTCAGTGCAAGTGGCCTATACATGCCACCCATGATGGTATTTCCTCGAAAGCGTATGGACCCGCAATTAATGCTAAATGCTGCACCAGGATCTTGGGGAGTATGCAGTGATTCGGGCTGGATGACAACGGAACTCTTTGCTGGCTGGTTTAAGAAATTCGTGGAATTTAGTGGAGTAACAACAGAACGACCTGTCCTGCTGTTGTTGGATGGACATAGTACTCACACTCAAAACATTGATCTCATCAATGAAGCGCGATCTCATGGAGTAATCATTCTTTGTTTTCCTCCACACACTACTCACCGACTTCAAGTTGCTGATGTTGCATATATGAGGCCACTCAGCACGTATTATGACCATCAAATCACAGCATGGCTACGCAGTAATCCGGGGATGATCGTCACGGTGCGGCAAGTCGCAGAAATTTTTGGAAAGGCTTTTATACAAGCATCAACGATGTCTACAGCAGTAAATGGATTTAAAAAGTGCGGAATTTGGCCATATGACCCCACAGTTTTTACTGAAACTGACTTCGCTCCATCTCTAACCACAGACATCCCTCAACCAGAGCCGTCACCAGTTACTGAAACACCAATAGCGGTTTCTGCAGAATCCAACAACGAAATACCAATGGAGATCGGTCTCACGGGAGCGACGTCATCGACCACTGTATCAGACAATGCCGTACTAACTACTACTGTCGCGGCTTCCACAGCCGAATCGTTGTGTGTGTCTGCGTCCTCTGTGGATTCTCAAACAGAATCAAGCACCGTTTTGGATGTATCTCAGAGTTCAGCTATTTTACCAGTATCATCAGCACCTGAAGATTTACAGTTGCAACCCTCCGAAGTTGAAATGGAACCATTGATTCAAACAGCAGCAAAGTCACCAGAACCTGGATGTTCTACTTATAGACCAAGTACGCCACGAGAATCTAGTTTCATTGTTGCTAGTCCCCAACAAGTTATGCCTTTTCCTGCAACAAGGAAAATTACAAGAGCACCAACAAAGAGAGGAAAAACCGCTATTATTACCTCATCGCCCTACAAAAATGAGttagaagataaaataaaaaagaaacaagagGTGGTTGACGCTAAAGAGAAAAGGAAGGCTATAAGAGAATTaaagaaaactcaaaaaaataccgttgccaataaaaataaagtgaccaaaaagaaaaaaaatactaaagctACTCGAAAATCGACTGTAGGATCGGAAAATAGTGGTAGTGAGTCAGAAAATCCTCCGTGTTTATATTGTCACGGTCTCTATTTAGAGTCTACAGAAGGCTGGGTGGCGTGTTCAGCATGCCGAAAATGGGCACATTGTAGCTGTGCAGGTGTTGAAGACGAGGATGAAGAGACTGCCTTTAAATGTGAAATTTGTCCATAG
- Protein Sequence
- MVKTYKRKTNRAEWSEEAMKNAVDAVIEGKMGYLSAAKTFSVPQTTLERKVKVVREKLSDGTSTSYELKVRLGPKDTVFSKEEEKELYNYILDMESRLYGLTIKDLRGLAYSLAVKNNKQHPFNNEKREAGNDWAHNFLKRHPELSIRQPESTSAARAAGFNKQVVDQFYNFLGNVYDENNLTPDRIFNCDETGISIVPKTKSKIIAKRGQKQVGAITSAERGTTITVEICFSASGLYMPPMMVFPRKRMDPQLMLNAAPGSWGVCSDSGWMTTELFAGWFKKFVEFSGVTTERPVLLLLDGHSTHTQNIDLINEARSHGVIILCFPPHTTHRLQVADVAYMRPLSTYYDHQITAWLRSNPGMIVTVRQVAEIFGKAFIQASTMSTAVNGFKKCGIWPYDPTVFTETDFAPSLTTDIPQPEPSPVTETPIAVSAESNNEIPMEIGLTGATSSTTVSDNAVLTTTVAASTAESLCVSASSVDSQTESSTVLDVSQSSAILPVSSAPEDLQLQPSEVEMEPLIQTAAKSPEPGCSTYRPSTPRESSFIVASPQQVMPFPATRKITRAPTKRGKTAIITSSPYKNELEDKIKKKQEVVDAKEKRKAIRELKKTQKNTVANKNKVTKKKKNTKATRKSTVGSENSGSESENPPCLYCHGLYLESTEGWVACSACRKWAHCSCAGVEDEDEETAFKCEICP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00654210;
- 90% Identity
- iTF_00411368;
- 80% Identity
- -