Basic Information

Insect: Lathronympha strigana
Gene Symbol: cheC
Assembly: GCA_949128165.1
Location: OX421916.1:18734893-18736983[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 6.6e-11 1.1e-07 32.8 0.0 1 43 15 58 15 60 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	6.6e-11	1.1e-07	32.8	0.0	1	43	15	58	15	60	0.92

Sequence Information

Coding Sequence: atgGTGAAAACTTATAAGAGAAAGACAAATAGAGGAGAGTGGTCAGAGGAGGCTATGAAAAATGCGGTGGATGCTGTAATAGAAGGAAAAATGGGTTACCTGTTAGCAGCAAAAACATTTTCTGTCCCTCAGACGACTTTAGAAAGAAAAGTCAAAGCAGTTCGAGAGAAGTTATCAGACGGTGCTTCCACTAGCCATGAATTGAAAGTTCGTTTAGGCCCTAAAGATACGGTTTTTTCtaaggaagaagaaaaagagcTGTGTAATTATATACTGGACATGGAAAGCAGACTGTATGGTCTTACAATAAAAGACTTAAGGGGTCTAGCGTACAGTTTGgcggttaaaaataataagcaacATCCATTTAATAACGAGAAAAGAGAAGCTGGAAAAGATTGGGCACACAACTTTCTCAAGAGACATCCTGAATTGTCTATTCGACAGCCTGAGAGTACTTCAGCAGCTCGTGCTGCAGGATTTAACAAGCAAGTTGTAGATCAGTTTTATAACTTTTTGGGGAACGTTTATGATGAAAATAATTTGACGCCTGATAGAATTTTTAACTGTGATGAGACAGGTATTTCTATTGTTCCAAAAACCAAATCAAAAATAATAGCCAAAAGAGGTCGAAAGCAAGTCGGAGCAATCACTTCTGCAGAAAGAGGGACAACAATAACTGTGGAAATCTGTTTCAGTGCAAGTGGCCTATACATGCCACCCATGATGGTGTTTCCTCGAAAGCGTATGGACCCGCAATTAATGTTAAATGCTGCACCAGGATCTTGGGGAGTATGCAGTGATTCGGGCTGGATGACAACGGAACTCTTTGCTGGCTGGTTTAAGAAATTCGTGGAATTTAGTGGAGCAACCACAGAACGACCTGTCCTTCTGTTGTTGGATGGACATAGTACTCACACTCAAAACATTGATCTCATCAATGAAGCGCGATCTCATGGAGTAATCATTCTATGCTTTCCTCCACACACTACTCACCGACTTCAAGTTGCCGATGTTGCATATATGAGGCCACTCAGCACGTATTATGACCATCAAATCACAGCATGGCTACGCAGTAATCCGGGGATGATCGTCACGGTACGGCAAGTCGCTGAAATTTTTGGAAAGGCTTTTATACAAGCATCAACGATGTCTACAGCAGTGAATGGATTTAAAAAGTGTGGAATTTGGCCATTTGACCCCACAGTTTTTACCGAAACTGATTTCGCTCCATCTCTAACCACAGACATTCCTCAACCCGAGGCGTCACCAGTTACTGAAACACCAATAACGGTTTCTGCAGTATCCAACAACGAAATACCAATGGAGATTGGTCTCACGGGAGCGACGTCATCGACCACTGTATCAGACAATGCCATACCAACTACTACTGTTGCGGCTTCCACATCTGAAACCTTGTGTGTGTCGGCGTCCTCTGTGGATTCTCAAACAGAATCAAGGACTGTTTTAGATGTATCTCAGGGTTCAGCTATTTTGCCAGTTTCATCAGCTCCTGTAGATTTACAGTTGCAACCCACCGAGGTTGAAATGGAACCATTGATTGAAACAGCAGCAAAATCATCAGAATCTGGACGCTCTAGTTATAGACCAAGTACGCCACAAGAATCTAGTTTCATTGTTGCTAGTCCCCAACAAGTTATGCCTTTTCCTGCAACAAGAAAAACTACAAGAGCACCGACAAAGAGAGGCAAAACCGCTATTATTACCTCGTCGCCCTACAAAAGTGAATtagaagataaaataaaaaagaaaaaagaggTTGACGACGCTAAAGAGAAAAGGAAGGCTATACgagaattaaagaaaactaaaaaaaatactgttgccaagaaaaataaagtaaccaaaaagaaaaaaaatactaaagctaCTCGAAAATCAACTGTAGGATCAGATAAAAGCGGTAGTGAGTCAGAAAATCCTCCGTGTTTATATTGTCACGGTCTCTATTTAGAGTCCACAGAAGGCTGGGTGGCGTGTTCGGCATGCAAAAAATGGGCACATTGCAGCTGTGCTGGTGTTGAAGACGAGGATGAAGAGACGGCCTTTAAATGTGAAATTTGTCCATAG
Protein Sequence: MVKTYKRKTNRGEWSEEAMKNAVDAVIEGKMGYLLAAKTFSVPQTTLERKVKAVREKLSDGASTSHELKVRLGPKDTVFSKEEEKELCNYILDMESRLYGLTIKDLRGLAYSLAVKNNKQHPFNNEKREAGKDWAHNFLKRHPELSIRQPESTSAARAAGFNKQVVDQFYNFLGNVYDENNLTPDRIFNCDETGISIVPKTKSKIIAKRGRKQVGAITSAERGTTITVEICFSASGLYMPPMMVFPRKRMDPQLMLNAAPGSWGVCSDSGWMTTELFAGWFKKFVEFSGATTERPVLLLLDGHSTHTQNIDLINEARSHGVIILCFPPHTTHRLQVADVAYMRPLSTYYDHQITAWLRSNPGMIVTVRQVAEIFGKAFIQASTMSTAVNGFKKCGIWPFDPTVFTETDFAPSLTTDIPQPEASPVTETPITVSAVSNNEIPMEIGLTGATSSTTVSDNAIPTTTVAASTSETLCVSASSVDSQTESRTVLDVSQGSAILPVSSAPVDLQLQPTEVEMEPLIETAAKSSESGRSSYRPSTPQESSFIVASPQQVMPFPATRKTTRAPTKRGKTAIITSSPYKSELEDKIKKKKEVDDAKEKRKAIRELKKTKKNTVAKKNKVTKKKKNTKATRKSTVGSDKSGSESENPPCLYCHGLYLESTEGWVACSACKKWAHCSCAGVEDEDEETAFKCEICP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654210;
90% Identity: iTF_00411368;
80% Identity: -