Cpom039428.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- Jarid2_8
- Assembly
- GCA_033807575.1
- Location
- JAPFFR010000174.1:76327-86828[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-16 2.1e-13 51.7 0.0 7 88 274 352 270 353 0.89
Sequence Information
- Coding Sequence
- ATGCAGCTCAATCCAGTGATTTGTTTGACTAGTAAATGCTCGGCAACCACAGACttgtcctcgaaacgtcggaggaaacCGAAAGTTGCTCCGGTCAAAGAGAAGAAAACGTTACCGAAGCGTGCGGCGAAGGCAGCCCCTGCGCCCCCTGCCCAGGAAGAGGTGGCCACCAACACGAGACTTCTCAGGAACTCCCGCGACCCTCCGCCGCCAAACCCGGACGTGTACGAGTTCGACGAACTAGAAGGCTCTCGGCCTCCCTCGGGCCTCCGCCGCCGCAACCAGCCCACCCCCGACCCCCCCGCGCAGAGCCCCGAAAGCATACAATACATGGACATATGCCCTACAAGCTCTCAACTAGCCAAAATTAATACCAAACAAAAAGAAGTTGGGAACGTACTTAGTGTCAGCTTGGTACCTGAGGACGATATATATAAGAAGCGGAAGAATTTGATAGATAATCTGACGAATAGTCCAGCGCTGTTAAACAAGATTTTCAACTCCTTACCGACAGAACTTCAGAACGAGCTTGGGAGCTTGGCCACGGAGGGGACTGGGCGGGAGGAGGCTTATTTGGACGAAAAGGCGGGGACGGTCTTAAAGGCACCCACGTACTATCCTACGGCTGAGGAGTTTGAGGATCCGATAAAATACTACGACAAAATCGCCCCCGAGGCCTCAAAATACGGCCTCTGCAAAATAGTTCCCCCTGAAAACTTCAAACCAACATGCACGATGAGCGACACGATCCGCTTCGCGGTCATATACCAGTACATCTCCAAGATGTTCAGCCGCTGGGGCCCCGTGTCCAGGGAGCTGGCTGCCATCAAGGCGCACCTGCGGACCCAGAGCGTCGTGTTCGCGCGGTCTCCCCTCTTGGACGGCAGCGAAGTGAACCTCCCCAGGCTATACCACGCCGTGGAACGCAACGGCGGTCTCAGCAACGTCATACAACGCATGCGGTGGGGCCGCGTCGCCGACGAGATGAAGCTGACCAAGTTGCAGCACCCGGAGCGCAAGCTGGACCCCATATACATGCGATATCTGCTGCCCTACGCCACGTTGTCCGATCAGGAACGCCAAAGTATAATGGCGGAAGTGGAAAAATGCTGGACCACCAAGTACCAGAAGATGCTAGAACGGGCCCGCAATCCCTTCCAGCGTCAGAACCGGATGCTGGGCACcgagtgcgagtcggaatcTGACGACGAAGGAGAGGATGGaaacacagctggtgcgctcCAAGAGGCagaggactgcatagtgcaggggcgcacaatgaacctcgtcacattcaaaAAAATCGCGACGTCGCTCATGGACGCGCACTTCGACCCGTCCAAGCAGCCGCCGGGCGCCGTCGACGTCGAGAAGGCGTACTGGCGCGCCGTGCTGCTTGGCACCGAGCACATCGGTATACATTTAGatttatag
- Protein Sequence
- MQLNPVICLTSKCSATTDLSSKRRRKPKVAPVKEKKTLPKRAAKAAPAPPAQEEVATNTRLLRNSRDPPPPNPDVYEFDELEGSRPPSGLRRRNQPTPDPPAQSPESIQYMDICPTSSQLAKINTKQKEVGNVLSVSLVPEDDIYKKRKNLIDNLTNSPALLNKIFNSLPTELQNELGSLATEGTGREEAYLDEKAGTVLKAPTYYPTAEEFEDPIKYYDKIAPEASKYGLCKIVPPENFKPTCTMSDTIRFAVIYQYISKMFSRWGPVSRELAAIKAHLRTQSVVFARSPLLDGSEVNLPRLYHAVERNGGLSNVIQRMRWGRVADEMKLTKLQHPERKLDPIYMRYLLPYATLSDQERQSIMAEVEKCWTTKYQKMLERARNPFQRQNRMLGTECESESDDEGEDGNTAGALQEAEDCIVQGRTMNLVTFKKIATSLMDAHFDPSKQPPGAVDVEKAYWRAVLLGTEHIGIHLDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00411201; iTF_00410063; iTF_00411192;
- 90% Identity
- iTF_00411201;
- 80% Identity
- -