Cpom039203.2
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- Jarid2
- Assembly
- GCA_033807575.1
- Location
- JAPFFR010000162.1:52287-57638[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-17 4.5e-14 53.8 0.0 7 88 295 373 291 374 0.89 2 2 7.5 1.4e+04 -2.3 0.0 31 51 448 458 436 474 0.58
Sequence Information
- Coding Sequence
- ATGCAGCTCAATCCAGTGATTTGTTTGACTAGTAAATGCTCGGCAACCACAGACttgtcctcgaaacgtcggaggaaacCGAAAGTTGCTCCGGTCAAAGAGAAGAAAACGTTACCGAAGCGTGCGGCGAAGGCAGCCCCTGCCCAGGAAGAGGTGGCCACCAACACGAGACTTCTCAGGAACTCCCGCGACCCTCCGCCGCCAAACCCGGACGTGTACGAGTTCGACGAACTAGAAGGCTCTCGGCCTCCCTCGGGCCTCCGCCGCCGCAACCAGCAGACCCCCGACCCCCCCGCGCAGAGCCCCGAAAGCATACAATACATGGACATATGCCCTACAAGCTCTCAACTAGccaaaattaatacaaaaaaaaagaagttgggAACTCCAGCGCTGTTAAATAAGATTTTCAACTCCTTACCGACAGAACTTCAGAACGAGCTTGGGAGCTTGGCCACGGAGGGGACTGGGCGGGAGGAGGCTTATTTGGACGAAAAGGCGGGGACGGTCTTAGAGGCACCCACGTACTATCCTACGGCTGAGGAGTTTGAGtgtttattgtaTCCACTGCTGACAGAACTTCTCAATGAGCTGGGGTGCTTGGCCACGGAGGGGACTGGGCGGGAGGAGGCTTATTTGGACGAAAAGGCGGGGACGGTCTTAGAGGCACCCACGTACTATCCTACGGCTGAGGAGTTTCAGGATCCGATAAAATACTATGACAAAATCGCCCCCGAGGCCTCAAAATACGGCCTCTGCAAAATAGTTCCCCCTGAAAACTTCAAACCAACATGCACGATGAGCGACACGATCCGCTTCGCGGTCATATACCAGTACATCTCCAAGATGTTCAGCCGCTGGGGCCCCGTGTCCAGGGAGCTGGCTGCCATCAAGGCGCACCTGCGGACCCAGAGCGTCGTGTTCGCGCGGTCTCCCCTCTTGGACGGCAGCGAAGTGAACCTCCCCAGGCTATACCACGCCGTGGAACGCAACGGCGGTCTCAGCAACGTCATACAACGCAAGCGGTGGGGCCGCGTCGCCGACGAGATGAAGCTGACCAAGTTGCAGCACCCGGAGCGCAAGCTGGACCCCATATACATGCGATATCTGCTGCCCTACGCCACGTTGTCCGATCAGGAACGCCAAAGTATAATGGCGGAAGTGGAAAAATGCTGGACCACCAAGTACCAGAAGATGCTAGAACGGGCCCGCAATCCCTTCCAGCGTCAGAACCGGATGCTGGGCACcgagtgcgagtcggaatcTGACGACGAAGGAGAGGATGGaaacacagctggtgcgctcCAAGAGGCagaggactgcatagtgcaggggcgcacaatgaacctcgtcacattcaaaAAAGTAACTCAGAATCTGTCGACGAAGTGGAAGATGGCtacacagctggtgcgctacatgacgctgaggactgcatag
- Protein Sequence
- MQLNPVICLTSKCSATTDLSSKRRRKPKVAPVKEKKTLPKRAAKAAPAQEEVATNTRLLRNSRDPPPPNPDVYEFDELEGSRPPSGLRRRNQQTPDPPAQSPESIQYMDICPTSSQLAKINTKKKKLGTPALLNKIFNSLPTELQNELGSLATEGTGREEAYLDEKAGTVLEAPTYYPTAEEFECLLYPLLTELLNELGCLATEGTGREEAYLDEKAGTVLEAPTYYPTAEEFQDPIKYYDKIAPEASKYGLCKIVPPENFKPTCTMSDTIRFAVIYQYISKMFSRWGPVSRELAAIKAHLRTQSVVFARSPLLDGSEVNLPRLYHAVERNGGLSNVIQRKRWGRVADEMKLTKLQHPERKLDPIYMRYLLPYATLSDQERQSIMAEVEKCWTTKYQKMLERARNPFQRQNRMLGTECESESDDEGEDGNTAGALQEAEDCIVQGRTMNLVTFKKVTQNLSTKWKMATQLVRYMTLRTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00411200;
- 90% Identity
- -
- 80% Identity
- -