Basic Information

Insect: Cydia fagiglandana
Gene Symbol: -
Assembly: GCA_963556715.1
Location: OY750794.1:8179496-8192646[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.085 5.4 8.7 4.1 1 23 83 106 83 106 0.97

2 17 0.0031 0.2 13.2 1.0 2 23 217 238 216 238 0.97

3 17 3.8 2.4e+02 3.5 1.4 1 23 244 266 244 267 0.94

4 17 0.32 21 6.9 3.4 2 22 508 528 507 528 0.95

5 17 0.51 33 6.2 0.2 2 23 785 806 784 806 0.96

6 17 0.011 0.73 11.4 0.8 2 23 883 904 882 904 0.97

7 17 0.11 7.2 8.3 1.6 1 23 912 934 912 934 0.97

8 17 0.17 11 7.7 3.6 1 23 969 991 969 991 0.95

9 17 0.0009 0.058 14.9 5.4 1 23 999 1021 999 1021 0.99

10 17 0.08 5.1 8.8 1.8 1 23 1101 1123 1101 1123 0.99

11 17 1.8 1.2e+02 4.5 1.3 2 23 1207 1228 1206 1228 0.92

12 17 0.05 3.2 9.4 0.8 1 23 1294 1316 1294 1316 0.95

13 17 0.011 0.7 11.5 2.3 1 23 1322 1344 1322 1344 0.95

14 17 0.012 0.79 11.3 2.6 1 23 1434 1456 1434 1456 0.97

15 17 0.00016 0.01 17.2 1.2 1 23 1462 1484 1462 1484 0.99

16 17 1.4 87 4.9 2.2 1 23 1576 1598 1576 1598 0.96

17 17 0.0033 0.21 13.1 4.5 1 23 1609 1631 1609 1631 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.085	5.4	8.7	4.1	1	23	83	106	83	106	0.97
2	17	0.0031	0.2	13.2	1.0	2	23	217	238	216	238	0.97
3	17	3.8	2.4e+02	3.5	1.4	1	23	244	266	244	267	0.94
4	17	0.32	21	6.9	3.4	2	22	508	528	507	528	0.95
5	17	0.51	33	6.2	0.2	2	23	785	806	784	806	0.96
6	17	0.011	0.73	11.4	0.8	2	23	883	904	882	904	0.97
7	17	0.11	7.2	8.3	1.6	1	23	912	934	912	934	0.97
8	17	0.17	11	7.7	3.6	1	23	969	991	969	991	0.95
9	17	0.0009	0.058	14.9	5.4	1	23	999	1021	999	1021	0.99
10	17	0.08	5.1	8.8	1.8	1	23	1101	1123	1101	1123	0.99
11	17	1.8	1.2e+02	4.5	1.3	2	23	1207	1228	1206	1228	0.92
12	17	0.05	3.2	9.4	0.8	1	23	1294	1316	1294	1316	0.95
13	17	0.011	0.7	11.5	2.3	1	23	1322	1344	1322	1344	0.95
14	17	0.012	0.79	11.3	2.6	1	23	1434	1456	1434	1456	0.97
15	17	0.00016	0.01	17.2	1.2	1	23	1462	1484	1462	1484	0.99
16	17	1.4	87	4.9	2.2	1	23	1576	1598	1576	1598	0.96
17	17	0.0033	0.21	13.1	4.5	1	23	1609	1631	1609	1631	0.98

Sequence Information

Coding Sequence: ATGCTCCAGCAAATGTCCTCGCCGCCGAGCGTTCACGTCGGCGAGGTCGCATCCCTAGTACGACTCGAGGGCCGCGTGTGCGGCGACGCGTCCTCTGAGGCCTCCTCGGACGCCGCCGAAGATTTTGAACTACCACAGTGCAAGATAAGAAGAAACTACAATTGCACCAAGTGCACATTCTACACACAGAACCCGCGGGTTTATTTAGTGCATACGAGAGACGTTCACTTTGAaaagtttaaaatatatgaCTGTCCCCATTGCGTTTACGCGTCGAGACATCACCAAAAGCTTGTGAGACACATAAAGATGGTTCATGCGGCGCCATCGCAAGTGGTCAAAGCGGATTTAGAGCCTCCGCCGGCGCCCGTGGCCACGACCACAGCGGAGCCGGAGGAGCGAATTGAAGATTTACTCGAAGAAGTCGAGGACACCGAAGAAATTCAATTAGATTTAGAAGACTGCATCGAAGAGTCGATGGACCACTCCGCAGATATGGAGGTCGAGGTCGACAGGGCAGTCGCCGAAGAGCCCTCGGATTTACCAAAGGACAAGACGAAATTTTTCTCCTGCACCAAATGCAACTACGTCACCCACATCCGTGCAAGATTCACCAAACACGTCAAATACCATTCGATGCCAATGATAAAATGTACGATGTGTGACTTCCGTACACCTTACAAATGGAATTTAGATCGACACATGAAGAATCACGGAGGGACGGGGAGTTTCAACTGTTCCATGTGCAACTTCACCGCCGACATTAAGCAGAGTCTGACGGTGCACGAGATGAATCACCACACGCCGCCCGTGGGACAATCGGTCGCGAGTCGCCGACGCAACCGGGTGGGCGCCAGCGACATCGCTCTCGccgacgcggcgcgcgcgctcgtCGTCAAGGAGGAGGAAGGGAGCGGCGACTCGCGCTCCTCGCACGCATCGGAAATGGGTCTCCAATATGCAGATATAGAAATGGTTACCTGTACCAGTGATAACGAAACGAGCTCTGAAACCGCTGCCAAAAAAGACATTGAATTGGCACAAGATACGCAACATCGACACTCGCCAAACAGCACAATGGGAGAAGggaaaacaaataaacaaagcAGAAAAATACCCAGACCGATACCGCAACTAATACCCCTGAACACGTCGACGCCCAATCAAAATAAATCACCACCAGGAGAACCACCGCTCAAAAAGTTTAAAGAAGATCCAAGTAGAGATACTAATACAGTTGATAATGTCGACAATTTACCAGCTGATATCACAATTATACCTGTCACCAATGGTACACCCCTTACTACAAAAGAACCCGCTGTGAAAAAGAAAAACGAATCCTTTTTTGACAGACTAAAAGAAAGGTTACTAACGGCAACCGGAGAGGAAGGAACTTTGACTTGTAAAAACTGCGGTTTTGAAAGTAAATGCTTATCAGAACATTCCGTACATGAAAAGAACTGCACAGTATCCGCAAACAGGGTTTTGGCAAATAACACCCACACGAGCCTTGGCTCTACGCGTTGCCAGAATTGTCGGCATAGATGCAAATCAAGTGCCGATTTATATGTTCACATGCAAACTTGCGGCAAAGTGGAGCAAGCAGAAAATGAACAATCAAATGACAGTGAAAACAAACACGAAACCACGTCAACAACTCATGAAGCCGATTTTGTTAAAGATGAACCACATCCCATGGAGAATGTCGTCTTCGTTTGGAATAATATTAATCCCGATACCGCCAAATTTGAAACGCCGTTGGACATCAATATTAATGATGATTCAACTATGCCCGAAACAAATAAACACTATGACTCAGAAATTGTTGATGAAAATGAAGGCATGAACTTGTCACCAAGCCAAGCAGCCGGAAAAAAGGTGTTTAAATGTCCGCACTGCACTTTCTGGGCATCGACCGCATCACGGTTCCACGTTCACATCGTCGGGCATTTGAATAAAAAACCTTTCGAATGCTCCCTCTGCAAATATAAGTCTAATTGGAGATGGGACATCACCAAGCACATTAAACTGAAATCAGCAAGAGACCCTGAACACAATGATGCAAAGGTTTTGATGACTGATGAAACTGGACGTAGGAACTACAGTAAATACAACAAGTTCTTAGCAGTGCCCGTTGTAAACGAATATGGAGAAACTGAGTTTGACTATATAGATCCAAACGCACTGGCGAACGGTAGCATGGAACTCGATGAATCATTCAACGACACGAATGATAATATCAACTCAACACTTGAAATGCAACCTCTTAACTTGCAAACTCTACATGGACAACACAGTATCGAGACAATGGATATCAAAAACGAAGATCAGAAACCTAAGAAAACGATGTGGAAATGCAAGAAATGTAACTACAAGGACCCATCGAAAGAAGCGCTGCTGGCACACGTCCGTGAGCACTCGAAGCCCGAAGATGGACAGGAGGAGAACAAGGCCTTCACCAAGAAGCCTGAGAACACGCCGGACCCTGCCGACCTGGCCTACCGCTGCGGGCACTGCAACCAGCTGTCCAACTGGAAGCACGTCATACAAAGACACTGTCGTTTGAAGCATGATGGAGTCATCAAAGTTATTACCACGGTCAAACCGAAACCTGATGCCTCGTCATTGTTGAACGAAATGAACGACACTTGCACCAAATGTCCGTTCAAAGCTGCAGATAGAAAACAACTTCAAAACCACATGCAGCAGCACCAGCCTTCGCCCCAGTCCATATTCAAATGCTACTTCTGTCCGTACTTCGTGAAAACTGAACACGACTTGGTGCAACATCTAGCTTTACATGGTGTCACAGACCCAGAAGAATACATCTCCAAAGCCATGGGATGCAAGTCGCCGCTGCCAGATAATCCTGGAAATTCGAGCGGGTCCATCTCAACCAAACGACACAAGTGCACGGAGTGTCCCTACGAAACCAACAGCAAGTCCCAGTTTATGTATCACGAGCAATTCCACCGGCTCCCAGCTGACACTCCATACAAATGCCAGGAATGCAACTACAGCGTTTCCAAGAGACACCTCCTCCATCAGCACATGAGAGTTCACGGGATCATGCCTAAGAAGACTGAAATGGAATTAGAAATGGAAGCGTCCTCGTCTTCTTGTAAGATGGAGATTCCTATCGATTTAAATGAAATTCCTTTCGTGTGGGTTTCGGCTAAAAACGAATTccacaaaatgtacaaatgtcGCTACTGCTCGTATGTAAATTCACAAAAGTGCAAAATACCTAATCATGAGAAGATTCACTGTATCGTCTTTGAAAACAGTGAAATCACTATTTATAAATGCTTGGAATGTAAGTTTACTTGCGATAATGCCGGAAGGTTGGCAGAACATTCGAGGACGCACGGCGAAATTTACGGACGCATTTACTGTCCAGTCGAACTCGATGTTCCCGATGAGGAGCAGATTACTAAATTACGCAAGGTTATAGAAACTGAGAAACTAAACAACCCGGATAGCCCCAGGGACGACATGGTTCTAAAAGACAATGAAGAACTTAAAATATTGTTCTTCTGTCATAAATGTCCGGCTAGATTTTTGATTGATAGTGATTTAAGGATCCATGATAAATTCCATGATCTGTTGTTTGCGAACAAATGCAAACTTTGTGAGTTTTCAGTGCCCCATGAGACTGAATTAAACGCTCATGCGGTCCACCATTCCGATGAGTATGCGACGGAAACTAAAATGCTCAAGTTTAAGCACCGATCTCATCCAGCACACAAGGAGCCAAAATTGGAAGTTGTACACTGCCCGCTCACTTCAGAAGTTAATTGGATAGTTTCGCACCCTTCGACTAACTTTGAGATTATAGATTCTTCGAAAAAGTGCAATGAGAATAGAGTGCCTAAGCAATATTTCTGCAAGGAATGCCCAGCCAAATTCTTCAAAACTTCTGCGTTAAGTTATCACATGGGATTGCACGGAGGGGATGGCGACCACAAGTGCAAAAAATGTAGCTACACTGTCAAAAACTTAGGAAATTTGGCTAAGCACGAATCGTTACACGAGAATGAAGGAAAAGCCAACACGTGTGATTACGAATCCGGAGAAGACAATGATTACAAAAACATTCCATTATCTGGCACAGATCTATTTCAACGGAAAACTGAAGCGCAGAAAAGAGTTGTAAAAGACAACAACAAGTTGGTGAAACCAAACGACCATTTCCCACCTGTACTACAGGCAGATCCTCAATTCGGATACCTAATGCATGGTAATCCAGAGTTTATCTATCCTACGTACATGAAAAATGGCCGTCAAAAAGAGAAAAGATACAAGTGCCACAAATGCCCATCCGCATTTGAGAAAAgagaacaatacaaaatacatttatcgCTACACGGATCCAAACAGAGATACAAGTGCGAGGTTTGTGATTATTCCGTTAAATACTATGCCAACTACGTCCAGCACATGAGGAAACATCAAATGAATGACGAGGCCCAGGCTGAAAGAAGAAAAGGTAACGAAGAGACTAATGAGGCTGAAAATGAGACACAGGAAGATAAACCAGCAAAAGGAAATATTAAGCTAGCTATTAAGACAATGCCAAAGGGGCCAACAAGGCCAAAAAGTGATTTTCAGCAGTTTTCTGTCAGCGACCAACAGACACTCCGCCTGCTACAACTAAGACGGTCTATAAATAATGCTGAAAAAGAAAAGCAACCGGAACCCACTCCCGCAAAGGAACGTAAGCTACACATGTGTCTGTTGTGTCCGTACACAAACCAGCGCCAAGATGCTTTAACAAATCACTATAAGAGACACGAAGATAACCTAAATGCCGCCAATGGCATTCATAAATGTCCACATTGTGACCTAGTCGTCGTTCAATCACACTTTCTGCGAGAACACCTGAAGACCCATTTTAATTATCAAAAGCATTTGACCCCTGAATGCTATGCAGCTAGTGAAGGTGTGACTTTTGTCATAAAACAACTCGATGATGAAGATACAAAAGATGAAGACAAGAGTGAACACTTAAATGAAGATATCACTGATATTGAAGTCAAAGAAGAAAAGAATGGTTTAATCGATGACAAGAAAGCAGAAGAAAACAAAACATGTGATCTGAAAGATATCTTTAAAAACGGACAGAAAAATGgtccaaaattaaatttaaaaattgctATGAAAGAAGAGACTTCTACTGATCTAGTTATTACCTTAGATGAAAAAATAACTTTCGACTCAAATGATAATAAGATATTTGTCAAACTTAAAACAGGGGAGCTTATTGTAGAGTAA
Protein Sequence: MLQQMSSPPSVHVGEVASLVRLEGRVCGDASSEASSDAAEDFELPQCKIRRNYNCTKCTFYTQNPRVYLVHTRDVHFEKFKIYDCPHCVYASRHHQKLVRHIKMVHAAPSQVVKADLEPPPAPVATTTAEPEERIEDLLEEVEDTEEIQLDLEDCIEESMDHSADMEVEVDRAVAEEPSDLPKDKTKFFSCTKCNYVTHIRARFTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGTGSFNCSMCNFTADIKQSLTVHEMNHHTPPVGQSVASRRRNRVGASDIALADAARALVVKEEEGSGDSRSSHASEMGLQYADIEMVTCTSDNETSSETAAKKDIELAQDTQHRHSPNSTMGEGKTNKQSRKIPRPIPQLIPLNTSTPNQNKSPPGEPPLKKFKEDPSRDTNTVDNVDNLPADITIIPVTNGTPLTTKEPAVKKKNESFFDRLKERLLTATGEEGTLTCKNCGFESKCLSEHSVHEKNCTVSANRVLANNTHTSLGSTRCQNCRHRCKSSADLYVHMQTCGKVEQAENEQSNDSENKHETTSTTHEADFVKDEPHPMENVVFVWNNINPDTAKFETPLDININDDSTMPETNKHYDSEIVDENEGMNLSPSQAAGKKVFKCPHCTFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAVPVVNEYGETEFDYIDPNALANGSMELDESFNDTNDNINSTLEMQPLNLQTLHGQHSIETMDIKNEDQKPKKTMWKCKKCNYKDPSKEALLAHVREHSKPEDGQEENKAFTKKPENTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDASSLLNEMNDTCTKCPFKAADRKQLQNHMQQHQPSPQSIFKCYFCPYFVKTEHDLVQHLALHGVTDPEEYISKAMGCKSPLPDNPGNSSGSISTKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCQECNYSVSKRHLLHQHMRVHGIMPKKTEMELEMEASSSSCKMEIPIDLNEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIVFENSEITIYKCLECKFTCDNAGRLAEHSRTHGEIYGRIYCPVELDVPDEEQITKLRKVIETEKLNNPDSPRDDMVLKDNEELKILFFCHKCPARFLIDSDLRIHDKFHDLLFANKCKLCEFSVPHETELNAHAVHHSDEYATETKMLKFKHRSHPAHKEPKLEVVHCPLTSEVNWIVSHPSTNFEIIDSSKKCNENRVPKQYFCKECPAKFFKTSALSYHMGLHGGDGDHKCKKCSYTVKNLGNLAKHESLHENEGKANTCDYESGEDNDYKNIPLSGTDLFQRKTEAQKRVVKDNNKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYMKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCEVCDYSVKYYANYVQHMRKHQMNDEAQAERRKGNEETNEAENETQEDKPAKGNIKLAIKTMPKGPTRPKSDFQQFSVSDQQTLRLLQLRRSINNAEKEKQPEPTPAKERKLHMCLLCPYTNQRQDALTNHYKRHEDNLNAANGIHKCPHCDLVVVQSHFLREHLKTHFNYQKHLTPECYAASEGVTFVIKQLDDEDTKDEDKSEHLNEDITDIEVKEEKNGLIDDKKAEENKTCDLKDIFKNGQKNGPKLNLKIAMKEETSTDLVITLDEKITFDSNDNKIFVKLKTGELIVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00150040;
90% Identity: iTF_01134374;
80% Identity: -