Basic Information

Insect: Cydia fagiglandana
Gene Symbol: Bcl11a
Assembly: GCA_963556715.1
Location: OY750814.1:6583087-6589189[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.53 34 6.2 6.0 2 23 156 180 155 180 0.73

2 12 6.8e-06 0.00044 21.6 3.5 1 23 186 208 186 208 0.96

3 12 9.6e-06 0.00062 21.1 0.8 1 23 214 236 214 236 0.98

4 12 2.6e-06 0.00017 22.9 4.0 1 23 242 264 242 264 0.98

5 12 0.00015 0.0095 17.3 1.1 1 23 297 319 297 319 0.98

6 12 0.00021 0.013 16.9 1.4 1 23 325 347 325 347 0.93

7 12 3.7e-06 0.00024 22.4 1.0 1 23 353 375 353 375 0.98

8 12 0.00039 0.025 16.0 0.9 1 23 381 403 381 403 0.98

9 12 0.00037 0.024 16.1 2.2 1 23 409 432 409 432 0.97

10 12 8e-06 0.00051 21.3 2.2 1 23 440 462 440 462 0.97

11 12 0.00031 0.02 16.4 0.8 1 23 483 505 483 505 0.97

12 12 0.00012 0.0076 17.7 3.1 1 23 511 533 511 533 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.53	34	6.2	6.0	2	23	156	180	155	180	0.73
2	12	6.8e-06	0.00044	21.6	3.5	1	23	186	208	186	208	0.96
3	12	9.6e-06	0.00062	21.1	0.8	1	23	214	236	214	236	0.98
4	12	2.6e-06	0.00017	22.9	4.0	1	23	242	264	242	264	0.98
5	12	0.00015	0.0095	17.3	1.1	1	23	297	319	297	319	0.98
6	12	0.00021	0.013	16.9	1.4	1	23	325	347	325	347	0.93
7	12	3.7e-06	0.00024	22.4	1.0	1	23	353	375	353	375	0.98
8	12	0.00039	0.025	16.0	0.9	1	23	381	403	381	403	0.98
9	12	0.00037	0.024	16.1	2.2	1	23	409	432	409	432	0.97
10	12	8e-06	0.00051	21.3	2.2	1	23	440	462	440	462	0.97
11	12	0.00031	0.02	16.4	0.8	1	23	483	505	483	505	0.97
12	12	0.00012	0.0076	17.7	3.1	1	23	511	533	511	533	0.97

Sequence Information

Coding Sequence: ATGGAGGAATTACACTCGTGCAGTTGTTGCTTGGTGCGGCCTCCGGAAAAGGGCCTCAGGACATTGTATAAACATCTCGGCAAAACAGAGATATATTATGAAATGCTGAAAGACTGTTTCGATATTAATCTCGGGATAGGAAATGAAGAGTGTGGGATCTGCGAGGTGTGCATTAGCCGATTGCGGGACGCGAACGACTTCAAGCTGCAAGTGCAGCGCAGCCAGGCTGAGCTGCAGGCGCGGCTCAAGGGAGTGCTTACTGCTAGCGACATCAAGCTGGAGAAGTCAGAGGTGGAGATGGCTGACGGCGAGGTCGTGTCAGTGGCCATCTACGGCGGCCCACCAGCGCCCTCAGCGCAACCCGTTCCTGCCGCGTCCAACCGCATTTCTTTTGCGTCAGATCCGACCCTCACCAACCTCGACGACTCTAAGCCGGCTCCGTCTTCAAACCGCACTAAAGTGCAGGAGTGTGACATATGCCACAAAACATTCAAAAACCCAAATGCGAAAACTAAACTCATAATCCACCGCCGCACCCACACTGGAGAGAAACCGTACTCGTGCAATGTATGCAACAAAAGATTCGCACAAAAGAGCCACTTAAATAGTCATTACGCGTACCATATTGGAAAGTTCAAATTCTCTTGCGAACAATGCGACACGAGATTCACGCAAAAAAACCAATGGGTTGTACATATGCGGATACACACTGGTGAAAGACCGTACTCGTGTGAAATATGTAACAAAACGTTCAAACAAAAAGGACACTTAACcgttcataaaaaaaatcattcgaAATATGACCCTAGTCTTGTAGAGCCCGGAGAAATAACAGTATGCAAAACAGTGTGTGCAGAAGTATCGAAAAATCAAGTACCCACCGAAAATTTCCCATGTGATATATGCAAAAAACAATTTACagaagaaaactatttaaacACTCATTTAAAAAATCACCCTGGTGATTATCCATTCACTTGTGAAACTTGCGATAGGAAATTCAAGACGCAGTCTGCATTAGATATTCATAAGTACGATCACACGGGAGGAAAACCTTTTAAATGTGAAGAATGCAGTAAACGATATACATCAAAAAGTGCTTTAAGACTTCATGCAAGAATTCACTCCGATGACTATAGATTCCCGTGCGACGTGTGTAATAAACGATTCCTACATAAAGACGCTATGAGCATACACATGCGTGTACACACTGGTGAAAAGCCTTATACCTGTGAGATATGCCAAAGGAAGTTCCCATATCGATGTGGcttaaaaaatcatttattagtACAACATAAACAAATAATGAACAAACAGTTCTGTTGCGATATTTGTGGGAAACGATTTGCACTACAAGGAACATTAAGTAAACATATGAATAAACACGCTGAGAAGGAAAAGGCAGAAAAAGCTATTAAGGAAGGGAGGAAGGAAGATCTCAAAACTTTTATGTGTGAAATATGTAGCAAACGGTTTTCAACCAAAGGTATCTTAAGAAACCATAGAGAAATACATAATGAAGAAAAACCTTTTGACTGCGTAGTATGCCACAAGAAATTCCGGATGAAGAAGTATTTAGAAGATCACATGAAAGTGCACGAGAGCTTTAAGCAACACGCTTGTGAACCAAAGTCCAGATGGCAACCATATGTTAAGGTTACCGTGGCCCTGTGTGTGGACGTGGCGTGTGATTGCGGAGCTCCAGTGCAGTCTGTTAATCACATCATCTACGACTGCCCCAAGAGGAAATATACCGGAGTTTCCCTGGACCTGCTCTGCCCTGATGTGAACGCAGCCCAATGGGTGAAGAAACTAGATGCTAAACTATAG
Protein Sequence: MEELHSCSCCLVRPPEKGLRTLYKHLGKTEIYYEMLKDCFDINLGIGNEECGICEVCISRLRDANDFKLQVQRSQAELQARLKGVLTASDIKLEKSEVEMADGEVVSVAIYGGPPAPSAQPVPAASNRISFASDPTLTNLDDSKPAPSSNRTKVQECDICHKTFKNPNAKTKLIIHRRTHTGEKPYSCNVCNKRFAQKSHLNSHYAYHIGKFKFSCEQCDTRFTQKNQWVVHMRIHTGERPYSCEICNKTFKQKGHLTVHKKNHSKYDPSLVEPGEITVCKTVCAEVSKNQVPTENFPCDICKKQFTEENYLNTHLKNHPGDYPFTCETCDRKFKTQSALDIHKYDHTGGKPFKCEECSKRYTSKSALRLHARIHSDDYRFPCDVCNKRFLHKDAMSIHMRVHTGEKPYTCEICQRKFPYRCGLKNHLLVQHKQIMNKQFCCDICGKRFALQGTLSKHMNKHAEKEKAEKAIKEGRKEDLKTFMCEICSKRFSTKGILRNHREIHNEEKPFDCVVCHKKFRMKKYLEDHMKVHESFKQHACEPKSRWQPYVKVTVALCVDVACDCGAPVQSVNHIIYDCPKRKYTGVSLDLLCPDVNAAQWVKKLDAKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00411696; iTF_00412733;
90% Identity: iTF_00412733;
80% Identity: -