Basic Information

Insect: Cydia strobilella
Gene Symbol: Bcl11a_2
Assembly: GCA_947568885.1
Location: OX387699.1:5175806-5180385[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.13 7.9 7.7 5.9 1 23 155 180 155 180 0.73

2 15 5.5e-06 0.00034 21.5 3.5 1 23 186 208 186 208 0.96

3 15 7.7e-06 0.00048 21.0 0.8 1 23 214 236 214 236 0.98

4 15 8.8e-07 5.5e-05 24.0 3.8 1 23 242 264 242 264 0.98

5 15 0.00024 0.015 16.3 0.6 1 23 299 321 299 321 0.98

6 15 0.00017 0.01 16.8 1.4 1 23 327 349 327 349 0.93

7 15 3e-06 0.00018 22.3 1.0 1 23 355 377 355 377 0.98

8 15 0.00031 0.019 16.0 0.9 1 23 383 405 383 405 0.98

9 15 0.0003 0.018 16.0 2.2 1 23 411 434 411 434 0.97

10 15 2.3e-05 0.0014 19.5 2.1 1 23 442 464 442 464 0.97

11 15 0.00025 0.015 16.3 0.8 1 23 485 507 485 507 0.97

12 15 1.2e-05 0.00072 20.5 3.3 1 23 513 535 513 535 0.98

13 15 3.7e-06 0.00023 22.0 2.1 1 23 541 564 541 564 0.96

14 15 0.00013 0.0078 17.2 1.2 1 23 570 592 570 592 0.96

15 15 0.015 0.96 10.6 3.3 1 23 598 621 598 622 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.13	7.9	7.7	5.9	1	23	155	180	155	180	0.73
2	15	5.5e-06	0.00034	21.5	3.5	1	23	186	208	186	208	0.96
3	15	7.7e-06	0.00048	21.0	0.8	1	23	214	236	214	236	0.98
4	15	8.8e-07	5.5e-05	24.0	3.8	1	23	242	264	242	264	0.98
5	15	0.00024	0.015	16.3	0.6	1	23	299	321	299	321	0.98
6	15	0.00017	0.01	16.8	1.4	1	23	327	349	327	349	0.93
7	15	3e-06	0.00018	22.3	1.0	1	23	355	377	355	377	0.98
8	15	0.00031	0.019	16.0	0.9	1	23	383	405	383	405	0.98
9	15	0.0003	0.018	16.0	2.2	1	23	411	434	411	434	0.97
10	15	2.3e-05	0.0014	19.5	2.1	1	23	442	464	442	464	0.97
11	15	0.00025	0.015	16.3	0.8	1	23	485	507	485	507	0.97
12	15	1.2e-05	0.00072	20.5	3.3	1	23	513	535	513	535	0.98
13	15	3.7e-06	0.00023	22.0	2.1	1	23	541	564	541	564	0.96
14	15	0.00013	0.0078	17.2	1.2	1	23	570	592	570	592	0.96
15	15	0.015	0.96	10.6	3.3	1	23	598	621	598	622	0.95

Sequence Information

Coding Sequence: ATGGAGGAGTTACACTCGTGCAGTTGTTGCTTGGTGCGGCCTCCGGAAAAGGGCCTCAGGACGTTGTATAAACATCTCGGCAAAACAGAGATATATTATGAAATGCTGAAAGACTGTTTTGATATAAATTTCGAGATAGGAAATGAGGAATGTGGGATCTGCGAGGTGTGCGTGGTGCGGCTGCGGGACGCGAGCGACTTCAAGCTGCAAGTGCAGCGCAGCCAGGCCGAGCTGCGCGCGCGGCTTAAGGGAGTGCTCACTGCCAACGACATCAAGCTGGAGAAGTCCGAGGTCGAGATGGCTGACGGCGAGGTCGTGTCAGTGGCCATTTACGGCGGACCACCAGCGCCTTCAGCGCAACCCGTTGCTGCCGTGTCTAACCGCATCTCTTTTGCGTCAGATCCGACCCTCACCAACCTCGACACTACCGAGCCGGCTCCGGCTTCTAACCGCACTAAAGTGCACGAGTGCGATATATGCCACAAAACATTCAAAAACCCAAATGCGAAAACTAAACTCATAATCCACCGCCGCACCCACACTGGAGAGAAACCGTACTCGTGCAATGTATGCAACAAAAGATTCGCACAAAAGAGCCACTTAAATAGTCATTACGCATACCACATTGGGAAGTTCAAATTCTCTTGCGAACAATGCGACACGAGATTCACGCAAAAAAACCAATGGGTTGTACATATGCGGATACACACTGGTGAAAGACCGTACTCGTGTGAAATATGCAACAAAACATTCAAACAAAAAGGACACTTAACCGTTCATAAAAGAAATCATTCTAAATATGATCCTAGTTGTGTAGAACCCGGAGAAATAACAGTATGCAAAACAGAGTGTGCAGAAGAATCGAAAAATCAAGTCCTCACCGAACATAAGTATTTCCCATGTGATATATGCAAAAAACAATTTGCAGAAGAAAATTATTTAAACACTCATTTAAAAAATCATCCTGGTGATTATCCATTCACCTGTGAAACTTGCGATAGGAAATTCAAGACGCAGTCTGCATTAGATATTCATAAGTACGATCACACGGGAGGAAAACCTTTTAAATGTGAAGAATGCAGTAAACGATATACATCAAAAAGCGCTTTAAGACTTCATGCAAGAATTCACTCCGAAGACTATAGATTCCCGTGTGATGTGTGTAATAAACGATTCCTACATAAAGACGCTATGAGCATACACATGCGTGTACACACTGGTGAAAAGCCTTATACGTGTGAGATATGCCAAAGGAAGTTCCCATATAGATGTGGCTTAAAAAATCATTTATTAGTACAACATAAACAAATAATGGACAAACAGTTCTGTTGCGATATTTGTGGGAAACGATTTGCACTACAGGGAACATTAAGTAAACATTTGAATAAACACGCTGAGAAGGAAAAGGCAGAAAAAGCTATTAAGGAAGGGAGGAAAGAAGATCTCAAAAATTTTATGTGCGAAATATGTAGCAAACGGTTTTCAACGAAAGGTATCTTAAGAAACCACAGAGAAATACACAATGAAGAAAAACCTTTTGAGTGCGAAGTATGCCATAAGAAATTTCGGATGAAGAAGTATTTAGAAGATCACATGAAGGTGCATGAGAGCTTCAAACAACACGCTTGTGAAGTATGTGGCCAACAGTTTAGACATAAATCTGCCTTAACGGTTCATATCCGACGAATGCATTCAGACATCAGGCCACATTGTTGTGACGTTTGTAAAAAGGCTTTTCCAGTACTTGCTGAATTAAAAGCGCATTATCGTGTACACACTGGTGAGAGACCGTATGCTTGCGAGATATGCTATAAGAAATTTCAGCGCCATAATGGAGTTAAGAAACATCTTATAAGTGTTCATCATGAGAAACCTTCAAAGTTTGTTAAACTAAAAGAATATAATAATCCTTACTGA
Protein Sequence: MEELHSCSCCLVRPPEKGLRTLYKHLGKTEIYYEMLKDCFDINFEIGNEECGICEVCVVRLRDASDFKLQVQRSQAELRARLKGVLTANDIKLEKSEVEMADGEVVSVAIYGGPPAPSAQPVAAVSNRISFASDPTLTNLDTTEPAPASNRTKVHECDICHKTFKNPNAKTKLIIHRRTHTGEKPYSCNVCNKRFAQKSHLNSHYAYHIGKFKFSCEQCDTRFTQKNQWVVHMRIHTGERPYSCEICNKTFKQKGHLTVHKRNHSKYDPSCVEPGEITVCKTECAEESKNQVLTEHKYFPCDICKKQFAEENYLNTHLKNHPGDYPFTCETCDRKFKTQSALDIHKYDHTGGKPFKCEECSKRYTSKSALRLHARIHSEDYRFPCDVCNKRFLHKDAMSIHMRVHTGEKPYTCEICQRKFPYRCGLKNHLLVQHKQIMDKQFCCDICGKRFALQGTLSKHLNKHAEKEKAEKAIKEGRKEDLKNFMCEICSKRFSTKGILRNHREIHNEEKPFECEVCHKKFRMKKYLEDHMKVHESFKQHACEVCGQQFRHKSALTVHIRRMHSDIRPHCCDVCKKAFPVLAELKAHYRVHTGERPYACEICYKKFQRHNGVKKHLISVHHEKPSKFVKLKEYNNPY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00410559;
90% Identity: iTF_00410559;
80% Identity: -