Cfag030925.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750814.1:10645151-10647914[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-10 1.7e-07 31.9 0.0 2 43 17 58 16 60 0.93 2 2 0.44 6.1e+02 1.3 0.0 1 13 472 484 472 487 0.90
Sequence Information
- Coding Sequence
- ATGGTTCGAAATTACATCCGCAAGACAGACAGAGGCATGACGTACAGCAAAGAAAAACTTCTGGAAGCGGTCGCGAAGATCCGATCAGGAGAGCTGAACGGGTACGAAGCCGCCAACAGGTACAACATACCTCGGACAACCTTGTACGACTACGCCAAAGGCAAGACTTTCAGGTCACTAACCCTCGGCAAACCACCAGCCCTTTCGTCAGAACTCGAAAAAGTTATAGCTGATAATCTCCTAGCGCTACAGGACAACGGATTCTATTTCGGAAGGAAAGACACATTAGACCTCGTTGGACTATATTTGAAAGAGAACAAGATAAGACATCCGTTTAAGTCTGGGAAACCGGGAGAATGTTGGCTAACCTCCTTCTGTAAACGAACTAATGTAACTTGCAAACCGCTGTATAAAGAATTTGGGAATCAAGACAAAGAAGTGATTATGGTTAAGGAATATTACTGTATACTAGAAATGAGGATAGATAAGCTAGAATTAGCGGATAAACCGGGACAAATTTGGCATATTGAAGAGCATAGCTTTTGCAGAGGGAAGAGAGTCAATAGTTATGATAAAGAAAAGGATCTAACTATGGTGACAATTTGTAGTGCTGAAGGCAGGAAAGCTCCACTTTTGACTGTCTTCAAAGGCGACGAAAGCCACGAGTGGATGCTAGGAAAGCATGTCAATGTAAGCCATAACAGTGGTATGTGTAGGGAAgtgtttaaaagttattttacgaCGGCATTCCTGAATTATATTGACGATAGTAAACCAAATTTGGTAATTTTCCAAGGACAGAGCTCTCTAATTGATCTCGATATCATTGAGGCTGCTAGAAAAGGTCAAGTGACATTAATTCATGCCCCTAATTATTTGGACAACTTAAATATATCGATCGCTAAAACCTTGAAGCTTAAGTGGGGCCAAATATTCGGGGAATCTACTAAAGAGTTTGCAACAGCCGCGTCTCAGCGTTTCGACGATCTACAAGAGATTGAAATAAGCGAGGACTTTAAAAACGCCGGCGTCCATCCATTTGCCGCAGTTTGTGACAGTAAATTTGGACCCGATCGTTTGAAAATCTACGAAGAATTTGTATGGTTTAAGGATAGGCATCAGAATAGTATTATGCAGTTGAATAAGGATACAGAACAAGTGATGGTGAATGAAGATATGGAATTCCAAATGAATTTTGAGGCGGAATTTGACAGCTCGACATCAATATCGATGACTGAAGAAATGCAAACACCAAACAATTGCAGCGGCGAGATATTAAGAAGAGCCTTGATTTCTGTCAAAAAGGAACTAATGCAACATGAACAGATCCGTAGCAATGGGGATTTAACCAAAGCTGAGGAGGACCACCTAGTTGAATATGTCACGGATCTAACTAACGCTGGATTTATAGTAACTGAAGACCAACTAATTGAAGCCGTGGACAATATACAAGGAAACCCTTTAAGGACTAGGGACCAACATCGTTACACGTACGAGTGTTTCTTAAAAAGCCACCCTAGACTGAAAGAGAAACTATCGCGGGAGATATCACATAAAATTACACAAGAATCTATTAATGTCTGGCTTTATCGTGTACGGATGTATCTCAAAAAACACAATCTAGAAGACGTCCTACGTCACCCAAGAAGAATTTTCAACTTTGGAGAGATAGCTTTAAATCTCAACACTAAAGACCGAGATCATGAAACCGATATTACGAATGATGATATGACGGTGTTCTTAACAGCATCAGCGGATGGAGATGTACAAGCTCCTTCTGTTCTAATTCCAATTAAGCAATCAGTTAGCTGTCCCTGGTCGAAAGCAGAAATCCTTACCGATCAAATAACTGATGTATTTTATGGCTGGCTGACTGAACACAATATTCAACTCCCTATTGTCTTATTTGTGCACCAAGTGACTCACATCAATCTGTCTTTGTTTGAATTCTGcaaagaaaaacaaattgtacTTTTAGCTTTGCCGCATATCGAAATACAACCTCTGGAAGAAGTTTTTCGGCCATTAAGAGTATATTGGAATGAGAATAGTGATattaaaacgcttaaaaaaGAAGAACTAGCAAAGGTATTggaaaattatgttaaaaaggATTTCAGCAAGGAAATTACGAAGAGTTTTAAATCATGTGGCATATATCCTTTCAATACAAAtgttaaatacaatacaaatgaaattcaaaccGAAACAAACGTTAAAGAAAATCATAAAGAAAACGAAAAGCAAGTTAATCTTCTAGAAGAAGTGGAAAAAAGAATTTCAAGCGGACTCTTAGAAGAATTCAAAAAAACTGGAGACATGTGGCAAGGAGACCCACGACATGTCAGTCTTTATTTGTTCTGGAAGAATGTCCGCGATGAAAACAAAGAAGATAGAAGAGAGGCACCAGTGTTTGTGGAGATCTGTTTAGAAGAAGTTAATAATAGTGCTTCGGATTGCCAAATTTCAAATAtgttgatttaa
- Protein Sequence
- MVRNYIRKTDRGMTYSKEKLLEAVAKIRSGELNGYEAANRYNIPRTTLYDYAKGKTFRSLTLGKPPALSSELEKVIADNLLALQDNGFYFGRKDTLDLVGLYLKENKIRHPFKSGKPGECWLTSFCKRTNVTCKPLYKEFGNQDKEVIMVKEYYCILEMRIDKLELADKPGQIWHIEEHSFCRGKRVNSYDKEKDLTMVTICSAEGRKAPLLTVFKGDESHEWMLGKHVNVSHNSGMCREVFKSYFTTAFLNYIDDSKPNLVIFQGQSSLIDLDIIEAARKGQVTLIHAPNYLDNLNISIAKTLKLKWGQIFGESTKEFATAASQRFDDLQEIEISEDFKNAGVHPFAAVCDSKFGPDRLKIYEEFVWFKDRHQNSIMQLNKDTEQVMVNEDMEFQMNFEAEFDSSTSISMTEEMQTPNNCSGEILRRALISVKKELMQHEQIRSNGDLTKAEEDHLVEYVTDLTNAGFIVTEDQLIEAVDNIQGNPLRTRDQHRYTYECFLKSHPRLKEKLSREISHKITQESINVWLYRVRMYLKKHNLEDVLRHPRRIFNFGEIALNLNTKDRDHETDITNDDMTVFLTASADGDVQAPSVLIPIKQSVSCPWSKAEILTDQITDVFYGWLTEHNIQLPIVLFVHQVTHINLSLFEFCKEKQIVLLALPHIEIQPLEEVFRPLRVYWNENSDIKTLKKEELAKVLENYVKKDFSKEITKSFKSCGIYPFNTNVKYNTNEIQTETNVKENHKENEKQVNLLEEVEKRISSGLLEEFKKTGDMWQGDPRHVSLYLFWKNVRDENKEDRREAPVFVEICLEEVNNSASDCQISNMLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00409213; iTF_00411364; iTF_00412450;
- 90% Identity
- iTF_00412450;
- 80% Identity
- -