Cstr021687.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387699.1:9130750-9133556[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-11 1.1e-07 32.1 0.1 2 43 17 58 16 60 0.93 2 2 0.28 4.8e+02 1.2 0.0 1 13 472 484 472 486 0.90
Sequence Information
- Coding Sequence
- ATGGTTCGAAACTACATCCGCAAAACTGACAGAGGCATGACGTACAGCAAAGAGAAACTAAAGGAGGCGGTCGCGAAGATCCGATCAGGAGAGCTGAACGGGTACGAAGCCGCCAACAGATACAACATACCTCGGACAACCTTGTACGACTACGCCAAAGGCAAGACTTTCAGGTCACTAACCCTCGGGAAACCACCAGCCCTTTCATCAGAACTCGAAAAAGTTATAGCTGATAATCTCCTAGCGCTACAGGAGAACGGATTCTATTTCGGAAGAAAAGACACATTAGATCTTGTGGGACTATATTTGAAAGAGAACAAGATAAGACATCCGTTTAAGTCTGGGAAACCTGGAGAATGCTGGCTAACCTCGTTCTGTAAAAGAACGAATGTAACTTGCAAACCGCTGTATAAAGAATTTGGGAATCAAGACAAAGGAGTAATTATGGTTAAGGAATATTATTGTATACTAGAAATGAGGATAGATAAGCTAGAATTAGCGGATAAACCGGGACAGATTTGGCATATTGAAGAGCATAGCTTTTATAGAGGGAAGAGAGTGAATAGTTATGATAAAGAAAAGGATCTAACTATTGTGACAATTTGTAGTGCTGAAGGCAGGAAAGCTCCACTTTTAACTGTCTTCAAAGGCAAGGAAAGCCACGAGTGGATGCTAGGAAAGCATGTAAATGTCAGCCATAACAGTGGTATGTGTAGAGAAGTATTTAAAAGCTATTTTACGACGGCATTCCTGAATTATATTGACGATAGTAAACCAAATTTGGTAATATTCCAAGGACAGAGCTCTCTAATTGATCTCGATATCATTGAGGCGGCAAGAAAAGGTCAAGTGACATTAATTCATGCCCCTACTTATTTGGAAAACATAAATATATCGATCGCTAGAACTTTGAAGCTTAAGTGGGACCAAATATTCGGGGAATCTACTAAAGAGTTTGCAACAGCCGCATCTCAGCGTTTCGACGATCTACTAGAGATTGAAATAAGCGAGGACTTCAAAAACGCCGGCGTCCATCCATTTGCCACGATTTGTGACAGTAAATTGGGAAGCGATCGTTTGAAAATCTACGAAGAATTTGTATGGTTTAAGGATAGGCATCAGAATAGCATGCAGATGAACAAGGATACAGAACAAGTGATGGTGAATGAAGATATGGAATTTCAAATGAATTTTGAGGCGGAATTTGACAGTTCGACATCGATGTCGATGACTGAAGAAGTACAAACACCAAACAAATCCAGCGGCGAGATATTAAGAAGAGCCTTGATTTCTGTCAAAAAGGAACTAATGCAACATGAACAGATCCGTAACAATGATAGGGAATTAACCAAAGCTGAGGAGGACCATCTAGTTCAATATGTCACGGATTTAACTAACGCTGGATTTATAATAACTGAAGACCAATTAATTGAAGCCGTGGACAATATACAAGGAAACCCGTTTAAGACTAGGGACCAACATCGTTACACGTACGAGTGTTTCTTAAAAAGCCACCCTAGACTGAAAGAGAAATTATCACGAGATGTATCAGACAAAATTACACAAGAATCTATTAACGTCTGGCTTTATCGTGTACGGGTGTATCTCAAAAAACACAATCTAGAAGAAGTCCTACGTCAGCCAAGACGAATTTTCAACTTCGGAGAGATAGCTCTAAATCTCAATACTAAAGCTAAAGACCAAGATCATGAAACCGATATTACGAATGATGATATAACAGTTTTCGTAACAGCATCAGCAGATGGCGATGTACAAGCTCCTTCTGTTTTATTCCCAATTAAGCAATCAATAAGCTGTCCCTGGTCGAAAGCAGAAATCCTTACCGATCAAATAACTGATGTATTTTATGACTGGTTGACTGAACACGATATTCAACTCCCTGTTGTCTTATTTGTACACCAAATGACTCACATCAACCTGGCTTTGTTTGAATTCTGCAAAGAAAAGCAAATTGTACTTTTAGCTTTACCACATGTCGAAATACAACCTCTGAAAGAAGTTTTTCTGCCATTAAGAGAATATTGGAATGAGAATAATGATATTAAAACGTTCAAAAAAGAAGAACTAGCAAAGGTGTTGGAAAATTATGTTAAACAGGACTTGAGCAAGGAAATTACGAAGAGTTTTAAAGCATGTGGCATATATCCTTTCAATACAAATGTTAAATACAATACGAATGATATTCAAACCGAAACATCCGTTAAAGAAAATCATAAAGAGGGAAAAAAAGTAAACGAATACCAAGTTAATCTTCTAGGAGAAGTAGAAAAAAGAATTTCAAGCGAACTCTTAGAAGAATTCAAAAAAACTGGAGATGTATGGCAAGGAGATCCTCGACATGTCAGTCTTTTTTTGTTCTGGAAGAATGTCCGCGATGAAAACAAAGAAGATAGAAGAGAGGCAGAAGGCACGGGAAAAGTGTTTGTGGAGGTCTGTTTAGAAGACGTGAACGATAGTGCTCCGGGTTGCAATGTTTCGAATATGTTGATTTAA
- Protein Sequence
- MVRNYIRKTDRGMTYSKEKLKEAVAKIRSGELNGYEAANRYNIPRTTLYDYAKGKTFRSLTLGKPPALSSELEKVIADNLLALQENGFYFGRKDTLDLVGLYLKENKIRHPFKSGKPGECWLTSFCKRTNVTCKPLYKEFGNQDKGVIMVKEYYCILEMRIDKLELADKPGQIWHIEEHSFYRGKRVNSYDKEKDLTIVTICSAEGRKAPLLTVFKGKESHEWMLGKHVNVSHNSGMCREVFKSYFTTAFLNYIDDSKPNLVIFQGQSSLIDLDIIEAARKGQVTLIHAPTYLENINISIARTLKLKWDQIFGESTKEFATAASQRFDDLLEIEISEDFKNAGVHPFATICDSKLGSDRLKIYEEFVWFKDRHQNSMQMNKDTEQVMVNEDMEFQMNFEAEFDSSTSMSMTEEVQTPNKSSGEILRRALISVKKELMQHEQIRNNDRELTKAEEDHLVQYVTDLTNAGFIITEDQLIEAVDNIQGNPFKTRDQHRYTYECFLKSHPRLKEKLSRDVSDKITQESINVWLYRVRVYLKKHNLEEVLRQPRRIFNFGEIALNLNTKAKDQDHETDITNDDITVFVTASADGDVQAPSVLFPIKQSISCPWSKAEILTDQITDVFYDWLTEHDIQLPVVLFVHQMTHINLALFEFCKEKQIVLLALPHVEIQPLKEVFLPLREYWNENNDIKTFKKEELAKVLENYVKQDLSKEITKSFKACGIYPFNTNVKYNTNDIQTETSVKENHKEGKKVNEYQVNLLGEVEKRISSELLEEFKKTGDVWQGDPRHVSLFLFWKNVRDENKEDRREAEGTGKVFVEVCLEDVNDSAPGCNVSNMLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410218;
- 90% Identity
- iTF_00410218; iTF_00409213;
- 80% Identity
- -