Cpom034164.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066368.1:712358-715274[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-10 2.4e-07 31.6 0.0 2 43 17 58 16 60 0.93 2 2 0.94 7.3e+02 1.2 0.0 1 13 472 484 472 487 0.90
Sequence Information
- Coding Sequence
- ATGGTTCGAAAGTACATCCGCAAGACCGACAGAGGCATGACGTACAGCAAAGAGAAGCTGCGAGAAGCGGTCGCGAAGATCCGCTCAGGAGAGCTGAACGGTTACGAAGCGGCCAACTTATACAACATACCTCGCACGACCTTGTACGACTACGCAAAAGGCAAGACTTTCAGGTCACTAACCCTCGGTAAACCACCAGCCCTTTCATCTGAACTCGAAAAAGTTATAGCTGATAACCTTCTAGCGCTTCAAGACAATGGATTTTATTTCGGAAGGAAAGACACATTAGATCTTGTAGGACTATATTTGAAAGAGAATAAGATAAGACATCCGTTTAAATCTGGGAAACCTGGAGAATGCTGGCTAACCTCTTTTTGTAAACGAACGAATGTCACTTGCAAACCGTTGCATAAAGAATTTGGGAATCAAGATAAAGAAGTGATCATGGTTAaggaattttattgtatactAGAAATGAGGATAGATAAGCTAGAATTAGCAGATAAACCGGGACAGATTTGGCATATTGAAGAGCATAGCTTTTTTAGAGGGAAGAGAGTGCATAGTTATGATAAAGAAAAAGATATAACTGTTGTGACAATTTGTAGTGCTGAAGGCAGAAAAGCTCCACTTTTAACTGTCTTCAAAGGCGAGGAAAGCCACGAGTGGATGCTAGGAAAACATGTAAATGTCAGTCATAAAAGTGGTATGTGTAGAGAAGtgtttaaaaactattttacgACGGTATTCCTGAATTATATTGACGATAGTAAACCAAATTTGGTAATTTTGCAAGCACACAGCTGTCTAATTGATCTCGATATCATTGAGGCGGCTAGAAAAGTACAAGTGACATTAATTCATGCCCCAACTTATTTGGAAAACTTAAGCATATCGATCGCTAGAACGTTGAAGCTTAAGTGGGGCCAAATATTCGGAGAATCGACTAAAGAGTTTGCAACAGCCGCATCTCAGCGTTTCGACGATCTACAAGATATTGAAATAAGCGAGGATTTTAAAAACGCCGGCATCCATCCATTTGCCACAGTTTGTGACAGTAAATTTGGAAGCGATCGTTTGAAAATCTACGAAGAATTTGTATGGTTTAAGGATAGGCATCAGAATAGCATGCAGTTAAACAAGGATACAGAACAAGTGATGGTGAATGAGGATACGGAATTCCAAATGAATTTTGAGGCGGAATTTGACAGTTCAACATCGATGTCGATGACTGAAGAAGTACAAACACCAAACAAATGCAGTGGTGAGATATTAAGAAAAGCTTTGATATCCGTCAAAAAAGAACTTATGCAACATGAACAGATCCATAACAATGATAGGGAATTGACCAAAGCTGAGGAGGACCACCTAGTTGAATATGTCACGGATCTAACTAACGCTGGATTTATAGTAACAGAAGACCAACTAATTGAAGCCGTGGACAATATACAAGGAAACCCGTTAAGGACTAGAGACCAACATCGTTACACATACGAGTGTTTCTTAAAAAGCCATCCTAGACTGAAAGAGAAACTATCGCGAGAGGTATCAGACAAAATTACACAAGAATCTATTAATGTCTGGCTTTATCGTGTACGGATGTATCTCAAAAAACACAATCTAGAAAACGTCCTACGTCAGCCACGACGAATTTTCAACTTTGGAGAGATAGCTTTAAATCTCAATAGTAAAGATAAAGACCAAGATCATGAAACAGATATTGCGAATGAAGATTTAACAGTTTTTGTAACAGCATCCGCAGATGGCGATGTGCAAGCTCCTTCTGTTCTATTCCCAATTAAGCAATCGATTAGCTGTCCATGGTCCAAAGAAGAAATCCTTACCGATCAAGTAACTGATgtattttatgacgttttgacTGAAAACAATATTCAACTCCCTGTTGTCTTATTTGTACACCAAATGACTCACATCAACCTACCTTTGTTTGAGTTCTGCaaagaaaaacaaattgtaCTTTTAGCTTTGCCACATACTGAAATACAACCCCTGGCAGAAGTTTTTCGGCCATTGCGAGAATATTGGAAAGAGAACAGTGATATTAAAACGCTTAAAAAAGAAGAACTAGCAAAGGTATTGGAAAATTATGTCAAACAGGATTTTAGCAAGGAAATTACAAAAAGTTTTAAAGCATGTGGCATATATCCTTTCaacacaaatattaaatataatacaaatgaAATTCAAACCGATAAAAACGTTAAAGAAAATCATAAAATGGGGAAAAAAGAAAACGAAAAGCAAATTAATCTTCTAGAAGAAGTAGAAAAGAGAATTTCAAGCAAACTCTTAGAAGAATTCAAAAAATCAGGAGATTCGTGGCAAGGAGATTCTCGACATGCCAGTCTTTTTCTGTTCTGGAAGAATGTCCGCGATGAAAACAAAGATGAAGAGGCAGAAAATGGAGGCACGGGAAAAGCGTTGGTGGAAATCTGTTACGAAGAAGGCAAAGATAGTGCTGCGGATTGTACAGTTTGA
- Protein Sequence
- MVRKYIRKTDRGMTYSKEKLREAVAKIRSGELNGYEAANLYNIPRTTLYDYAKGKTFRSLTLGKPPALSSELEKVIADNLLALQDNGFYFGRKDTLDLVGLYLKENKIRHPFKSGKPGECWLTSFCKRTNVTCKPLHKEFGNQDKEVIMVKEFYCILEMRIDKLELADKPGQIWHIEEHSFFRGKRVHSYDKEKDITVVTICSAEGRKAPLLTVFKGEESHEWMLGKHVNVSHKSGMCREVFKNYFTTVFLNYIDDSKPNLVILQAHSCLIDLDIIEAARKVQVTLIHAPTYLENLSISIARTLKLKWGQIFGESTKEFATAASQRFDDLQDIEISEDFKNAGIHPFATVCDSKFGSDRLKIYEEFVWFKDRHQNSMQLNKDTEQVMVNEDTEFQMNFEAEFDSSTSMSMTEEVQTPNKCSGEILRKALISVKKELMQHEQIHNNDRELTKAEEDHLVEYVTDLTNAGFIVTEDQLIEAVDNIQGNPLRTRDQHRYTYECFLKSHPRLKEKLSREVSDKITQESINVWLYRVRMYLKKHNLENVLRQPRRIFNFGEIALNLNSKDKDQDHETDIANEDLTVFVTASADGDVQAPSVLFPIKQSISCPWSKEEILTDQVTDVFYDVLTENNIQLPVVLFVHQMTHINLPLFEFCKEKQIVLLALPHTEIQPLAEVFRPLREYWKENSDIKTLKKEELAKVLENYVKQDFSKEITKSFKACGIYPFNTNIKYNTNEIQTDKNVKENHKMGKKENEKQINLLEEVEKRISSKLLEEFKKSGDSWQGDSRHASLFLFWKNVRDENKDEEAENGGTGKALVEICYEEGKDSAADCTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410218;
- 90% Identity
- -
- 80% Identity
- -