Camp005386.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- zfh1
- Assembly
- GCA_948474715.1
- Location
- OX419679.1:5315486-5321310[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0025 16 6.2 0.1 10 31 152 174 144 188 0.77 2 7 0.017 1.1e+02 3.5 0.0 21 49 220 248 218 251 0.91 3 7 0.3 1.9e+03 -0.4 0.0 22 31 305 314 297 326 0.82 4 7 0.00038 2.4 8.8 0.1 21 48 388 415 383 417 0.91 5 7 0.00033 2.1 9.0 0.2 20 46 497 523 490 534 0.87 6 7 0.14 8.8e+02 0.6 0.1 16 32 550 566 539 581 0.75 7 7 3.7e-05 0.23 12.1 0.1 17 52 578 614 572 616 0.86
Sequence Information
- Coding Sequence
- ATGGAAGCATATTACTCGTGTAGCTGCTGCCTGGTGCGCCCTCCGGACAAAGGCATCAAGACACTATACAATCATCTCGGCAAAGCAGAGATATATTACGACATGTTGAGAGAATGCTTTGGTTTAAATCTAAGTTTGGGAAATGACGAGTGCGGGATCTGCGAGGTGTGTGTGGGCCGGCTGCGGGACGCGAGCGACTTCAAGCTGCAAGTGCAGCGCGTGCAGGACGTACTGCACAAGCGGCTCACGGGAGCACTCCCTGCCAATGCTGGTGACAACATCAAAATCAAGTTAGAGACACCAGATGACGCCATTTCGCGCGGGATCAAGCAGGAGGGGCCGGAGGAGGAGGCTGACAGCAACTTTGTATCAGTTGCATTACACGAAGGATCGCCAGCGCCTTTTACTCAACCTGTTCCTACCGCGTCCCACAGCGCCTCGGTCGCGCCAGCCCCGAACACTACCAGGCGCCGGCGCCGCTCCAACACTGGAGAGAAACCTTACGCGTGCAACATATGCGACAAAAGATTCGGACAGAAGGGCCACTTTAATGTTCATTACGCAAACCATATAGGAAAATTCAAATTCTCTTGCGAATTATGCAAAAGGGGATTCGTATACAAACAACAATATATTACTCATATGCTGATCCATACTGGTGAAAAACCATACGAATGTGACATATGCAACAAGAAATATAGACATAAAGGCCAATTAAACCAACATAAAAATTCAATTCATTTTAAATATGATCAGGATCGCGTGGAGCCAGGAGAAATAACTACATGCAAAAAAGAGTCGTCAGAAGAATCAGAAGATCATGTGCTCGCTAAATATTTTACGTGTGATATATGCAGAAAGCAATTTGCGGATAAACACTATTTAGACGCTCATTCAAAATACCACTCTGGAGATTATCCGTTCACTTGCGACATTTGTAAAAGGAAATTTAATACGCAGTTTGCCTTGAATACACATAAAGTTGATCACTCGAGAGGGAGACCTTTTAAGTGTGATAAATGCAATAAAAGGTACACAACGAAAAGTGTTTTAACTCTACATTTGAAAGTTCACGCTGAGGATTATAAGTACGCATGTCATCTGTGTAGTAAACGATTCATAACAAGGGAGACATTTAATGTACACATGCGCGTACACACGGGGGAAAAGCCGTATACCTGTGTAACTTGTGAAGCTAAGTTCCGCTATAGATATGACTTGAAGAAACATTTATTGCAGAAACACAACCAAGTTATGGACAAACAGTTCAGTTGTGATACTTGTGGGAAACAATTTGCATTACAGGGGACGTTAGTAAAACATATGTACAGACACACTGTCCAGACTGAGAAGGCAACGAAGAAGATGGAAAAGAAGAAGAAGAAGAAGGAAACCGCTGATAAAAAGAAAGACCTAGCATTCATGTGTGAAATATGTAGCAAACGATTTTCGACAATAGCTATTCTAAAAACCCATAGATTCACACATAATGAAGAAAAACCTATCGAGTGCGATGTATGTCATAAAAAATACCGAACGAAGAGGAATTTACTGGACCACATGCAGGTGCACGAGGAAAAAAAACACTCGTGTGAAGTATGCGGCCAGCCATTCAGACATAAGTCTGCCTTGAATGTTCATATCCGACGGTTCCACTCCGAAAACAGTAGACCACATGTTTGCGATATTTGTAATAAGGCTTTTGTGGTTCTTGCTCAACTTAAAGAACATTCTCGGGTACACACTGGGGAGAAACCGTATGCTTGCGAAATATGCTATAAGAAATTTCCGTGGCAAAACGGGGTTAAACGACATCTTAAACAAGTTCACAACGAGAAACCTACGAGATTTGTTAAAATAACAGAATTGAATAAATATGACTAA
- Protein Sequence
- MEAYYSCSCCLVRPPDKGIKTLYNHLGKAEIYYDMLRECFGLNLSLGNDECGICEVCVGRLRDASDFKLQVQRVQDVLHKRLTGALPANAGDNIKIKLETPDDAISRGIKQEGPEEEADSNFVSVALHEGSPAPFTQPVPTASHSASVAPAPNTTRRRRRSNTGEKPYACNICDKRFGQKGHFNVHYANHIGKFKFSCELCKRGFVYKQQYITHMLIHTGEKPYECDICNKKYRHKGQLNQHKNSIHFKYDQDRVEPGEITTCKKESSEESEDHVLAKYFTCDICRKQFADKHYLDAHSKYHSGDYPFTCDICKRKFNTQFALNTHKVDHSRGRPFKCDKCNKRYTTKSVLTLHLKVHAEDYKYACHLCSKRFITRETFNVHMRVHTGEKPYTCVTCEAKFRYRYDLKKHLLQKHNQVMDKQFSCDTCGKQFALQGTLVKHMYRHTVQTEKATKKMEKKKKKKETADKKKDLAFMCEICSKRFSTIAILKTHRFTHNEEKPIECDVCHKKYRTKRNLLDHMQVHEEKKHSCEVCGQPFRHKSALNVHIRRFHSENSRPHVCDICNKAFVVLAQLKEHSRVHTGEKPYACEICYKKFPWQNGVKRHLKQVHNEKPTRFVKITELNKYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410540;
- 90% Identity
- iTF_00409522;
- 80% Identity
- iTF_00409522;