Camp022091.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia amplana
Gene Symbol
-
Assembly
GCA_948474715.1
Location
OX419659.1:13958309-13963097[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.21 11 7.2 3.4 2 22 191 211 190 211 0.95
2 15 0.33 18 6.5 0.2 2 23 468 489 467 489 0.96
3 15 0.042 2.3 9.3 1.9 2 23 566 587 565 587 0.97
4 15 0.072 3.9 8.6 1.6 1 23 595 617 595 617 0.97
5 15 0.11 5.9 8.0 3.6 1 23 652 674 652 674 0.95
6 15 0.00058 0.031 15.2 5.4 1 23 682 704 682 704 0.99
7 15 0.051 2.8 9.1 1.8 1 23 784 806 784 806 0.99
8 15 5.6 3e+02 2.6 2.3 1 19 861 879 861 883 0.90
9 15 1 56 5.0 0.5 2 23 890 911 889 911 0.92
10 15 0.032 1.7 9.7 0.8 1 23 977 999 977 999 0.95
11 15 0.007 0.38 11.8 2.3 1 23 1005 1027 1005 1027 0.95
12 15 0.0079 0.43 11.6 2.6 1 23 1117 1139 1117 1139 0.97
13 15 0.0001 0.0057 17.5 1.2 1 23 1145 1167 1145 1167 0.99
14 15 0.87 47 5.2 2.2 1 23 1259 1281 1259 1281 0.96
15 15 0.0021 0.12 13.4 4.5 1 23 1292 1314 1292 1314 0.98

Sequence Information

Coding Sequence
ATGGGTCTCCAATATGCAGATATAGAAATGATTACTTGTACCAGTGACAACGAAACGAGCACTGAATCAGCTGCCAAAAAAGACTCTGAATTGGCACAAGATACGCAACATCGACAATCGCCAAACAGCACGATGGGAGAAGGGAAAACAAACAAACAAAGCAGAAAAATACCCAGACCGATACCGCAACTAATACCCCTGAACACGTCGACGCCCAATCAAAATAAGTCACCACCAGGAGAACCACCGCTCAAAAAGTTTAAAGAAGATCTAAGTAGACATACAGTTGATAATGTCGACAATTTTCCAGCTGATATCACAATTATACCTGTCACCAATGGTACACCCCTTAGTACAAAAGAACCCGCGGTGAAGAAGAAAAACGAATCCTTTTTTGACAGACTAAAAGAAAGGTTGCTAACAGCAACCGGAGAGGAAGGAACGTTGACATGCAAAAACTGCGGTTTTGAAAGCAAATGCTTATCAGAACATTCTGTACACGAAAAGAACTGCACAGTATCAGCAAACAGGGTTTTGGCAAATAACACACACACGAGCCTTGGCTCTACGCGTTGCCAGAATTGTCGGCATAGATGCAAATCCAGTGCCGATTTATATGTTCACATGCAAACATGCGGCAAAGTGGAGAAAGCAGAAAATGAACAGTCAAATGACAGTGAAAACAAACACGAAACCACGTCAACAGCCCATGAAGCCGATTTTGTTAAAGATGAACCGCATCCCATGGAAAATGTCGTCTTCGTTTGGAATAATATTAATCCCGATACCGCCAAATTTGAGACGCCGTTAGACATCAATATTAATGATGATTCAACTATGCCCGAAACAAATAAAAATTATGACTCAGAAATAGTTGATGAAAATGAAGGGATGAACTTGTCACCTAGCCAAGCTGCCGGAAAAAAGGTGTTTAAATGTCCGCACTGCACTTTCTGGGCATCGACCGCATCACGGTTCCACGTTCACATCGTCGGGCATTTGAATAAAAAACCTTTCGAATGCTCCCTCTGCAAATATAAATCGAATTGGAGATGGGACATCACCAAGCACATAAAACTGAAATCAGCAAGAGACCCTGAACACAATGATGCAAAGGTTTTGATGACTGATGAAACTGGCCGGAGGAACTACAGTAAATACAACAAGTTCTTAGCAGTGCCCGTCCTAAACGAATATGGAGAAACCGAATTTGACTATATAGATCCAAACGCACTGGCGAACGGTAGCATGGAACTCGATGAATCATTCAACGACACGAATGATAATATCAACACAACACTTGAAATGCAACCTCTTAACTTGCAAACTCTACATGGACAGCACAGTATCGAGACAATGGATATTAAAAACGAAGATCAGAAACCTAAGAAAACGATGTGGAAATGCAAAAAATGTAACTACAAGGACCCATCGAAGGAAGCGCTACTAGCACACGTCCGCGAGCACTCGAAGCCCGAAGACGGACACGAGGAGAACAAGTCCTTCACCAAGAAACCTGACAACACGCCGGACCCGGCCGACCTGGCCTACCGCTGCGGGCACTGCAACCAGCTGTCCAACTGGAAGCACGTCATACAGAGACACTGTCGTTTGAAGCATGATGGAGTCATCAAAGTTATTACCACGGTCAAACCGAAACCGGATGCGTCGTCATTGCTGAACGAAATGAACGACACTTGCACCAAATGTCCGTTCAAAGCTGCAGACAGAAAACAACTTCTACACCACATGCAGCAGCACCAGCCTTCGACCCTGTCCATATTCAAATGCTACTTCTGTCCGTACTTCGTGAAAACTGAACACGACTTAGTGCAACATCTAGCTTTACATGGTGTCACAGACCCAGAAGAATACATGTCCAAAGCAATGGGATGCAAGTCGCCGCTGCCAGAAAATGCTGGCAATTCGAGCGGGTCCGTCTCAACCAAACGACACAAGTGCACGGAGTGTCCCTACGAAACCAATAGCAAGTCTCAGTTTATGTATCACGAGCAATTCCACCGGCTCCCAGCAGACACTCCATACAAATGCCAGGAATGCAACTACAGCGTTTCCAAGAGACACCTTCTCCATCAGCACATGAGAGTTCACGGAATCATGCCTAAGAAAACTGAAATGGAATTAGAAATGGAAGCGTCCTCGTCCTCTTGCAAGATGGAGATTCCTATCGATTTAAACGAAATTCCTTTCGTGTGGGTTTCGGCTAAAAACGAATTCCACAAAATGTACAAATGCCGCTACTGTTCGTATGTAAATTCACAAAAGTGCAAAATACCAAATCATGAGAAGATTCATTGTATCGTCTTTGAAAACAGTGAAATCACTATTTACAAATGCTTGGAATGTAAGTTTACTTGCGATAATGCCGGAAGGTTGGCCGAACATTCAAGGACGCATGGAGAAATTTACGGACGCATCTACTGTCCAGTCGAAGCCGATGTTCCCGAGGAGGAGCAGATTACTAAATTACGCAAGGTTATAGAAGCTGAGAAACTAAATAACCCGGATAGCCCCAGAGACGAGATGCTTTTAAAAGATAATGAAGAACTTAAAATATTGTTCTTCTGTCATAAATGCCCGGCTAGATTTTTCATTGACAGTGATTTGAGGATCCATGACAAATTCCACGATCTGTTGTTTGCAAATAAATGCAAGCTTTGTGAGTTTTCAGTGCCCCAAGAAACTGAATTAAACGTTCATGCGGTCCACCATTCCGATGAGTATGCGACGGAAACTAAAATGCTCAAGTTTAAGCATCGATCTCACCCAGCGCACAAGGAGCCGAAATTGGAAGTTGTACACTGCCCGCTCACTTCAAAAGTAAATTGGATAGTTTCGCACCCGACGACTAACTTTGAGATTGTAGATTCTTCGAAAAAATGCAACGAGAATAGAGTGCCTAAGCAATATTTCTGCAAGGAATGTCCAGCCAAATTCTTCAAAACTTCCGCGTTAAGTTATCACATGGGATTGCACGGAGGGGATGGCGACCACAAGTGCAAAAAATGTAGCTACACTGTTAAAAACTTAGGAAATTTGGCCAAGCATGAATCGTTACACGAGAATGACGGAAAAGCCAACACGTGTGATTACGAATCCGGAGAAGACAATGATTACAAAAACATTCCACTATCGGGCACTGATCTATTTCAACGGAAAACTGAAGCGCAGAAAAGAGTTGTAAAAGACAACAACAAGTTGGTGAAACCAAACGACCATTTCCCACCTGTGCTACAGGCAGATCCTCAATTCGGATACCTAATGCATGGTAATCCAGAGTTTATCTATCCTACGTACATGAAAAATGGCCGTCAAAAAGAGAAAAGATACAAGTGCCACAAATGCCCATCCGCATTTGAGAAAAGAGAACAATACAAAATACATTTATCGCTACACGGATCGAAACAGAGATACAAGTGCGAGGTTTGTGATTATTCTGTAAAATACTACGCCAACTACGTCCAACACATGAGGAAACATCAAATGAATGACGAAGCCCACGCTGAAAGAAGAAAAAGTAATGAAGAGACTAATGAAGCTGAAAACGAGACACAGGAAGATAAACCAGCAAAAGGAAATATTAAGCTAGCTATTAAGACAATGCCAAAGGGGCCAACAAGGCCAAAAAGTGATTTTCAGCAGTTTTCTGTCAGTGACCAACAAACACTCCGCCTGCTACAACTAAGACGGTCTATAAATAATGCTGAAAAAGAAAAGCAACCGGACCCCACTCCCGCAAAGGAACGTAAGCTACACATGTGTTTGTTGTGTCCTTACACGAACCAGCGCCAAGACGCTTTAACAAATCACTATAAGAGACACGAAGATAACCTAAATGCCGCCAATGGCATTCATAAATGTCCACATTGTGACCTAGTCGTCGTTCAATCACACTTTCTGCGAGAACACCTAAAGACTCATTTTAATTATCAAAAGCATTTGACCCCTGAATGCTATGCAGCTAGTGAAGGTGTGACCTTTATCATAAAACAACTCGATGATGATGAAGATACAAAAGATGAAGACAAGAGTGAACATTTAAATGAAGATATCACTGATATTGAAGTCAAAGAAAAGGATGGTTTAATCGATGACAAGAAATCACAAGAAAACAACATATGTGATCTGAAAGATATCTTTAAAAATGGACAGAAAAAAGGTCCAAAATTAAATTTAAAAATTGCGGTGAAAGAAGAGACTTCTACTGATCTAGTTATTACTTTAGATGAAAAAATTACTTTCGACTCAAATGATAATAAGATATTCGTCAAACTTAAAACAGGGGAGCTTATTGTAGAGTAA
Protein Sequence
MGLQYADIEMITCTSDNETSTESAAKKDSELAQDTQHRQSPNSTMGEGKTNKQSRKIPRPIPQLIPLNTSTPNQNKSPPGEPPLKKFKEDLSRHTVDNVDNFPADITIIPVTNGTPLSTKEPAVKKKNESFFDRLKERLLTATGEEGTLTCKNCGFESKCLSEHSVHEKNCTVSANRVLANNTHTSLGSTRCQNCRHRCKSSADLYVHMQTCGKVEKAENEQSNDSENKHETTSTAHEADFVKDEPHPMENVVFVWNNINPDTAKFETPLDININDDSTMPETNKNYDSEIVDENEGMNLSPSQAAGKKVFKCPHCTFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAVPVLNEYGETEFDYIDPNALANGSMELDESFNDTNDNINTTLEMQPLNLQTLHGQHSIETMDIKNEDQKPKKTMWKCKKCNYKDPSKEALLAHVREHSKPEDGHEENKSFTKKPDNTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDASSLLNEMNDTCTKCPFKAADRKQLLHHMQQHQPSTLSIFKCYFCPYFVKTEHDLVQHLALHGVTDPEEYMSKAMGCKSPLPENAGNSSGSVSTKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCQECNYSVSKRHLLHQHMRVHGIMPKKTEMELEMEASSSSCKMEIPIDLNEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIVFENSEITIYKCLECKFTCDNAGRLAEHSRTHGEIYGRIYCPVEADVPEEEQITKLRKVIEAEKLNNPDSPRDEMLLKDNEELKILFFCHKCPARFFIDSDLRIHDKFHDLLFANKCKLCEFSVPQETELNVHAVHHSDEYATETKMLKFKHRSHPAHKEPKLEVVHCPLTSKVNWIVSHPTTNFEIVDSSKKCNENRVPKQYFCKECPAKFFKTSALSYHMGLHGGDGDHKCKKCSYTVKNLGNLAKHESLHENDGKANTCDYESGEDNDYKNIPLSGTDLFQRKTEAQKRVVKDNNKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYMKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCEVCDYSVKYYANYVQHMRKHQMNDEAHAERRKSNEETNEAENETQEDKPAKGNIKLAIKTMPKGPTRPKSDFQQFSVSDQQTLRLLQLRRSINNAEKEKQPDPTPAKERKLHMCLLCPYTNQRQDALTNHYKRHEDNLNAANGIHKCPHCDLVVVQSHFLREHLKTHFNYQKHLTPECYAASEGVTFIIKQLDDDEDTKDEDKSEHLNEDITDIEVKEKDGLIDDKKSQENNICDLKDIFKNGQKKGPKLNLKIAVKEETSTDLVITLDEKITFDSNDNKIFVKLKTGELIVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00150040;
90% Identity
iTF_01134374;
80% Identity
-