Cper023124.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596229.1:3588673-3593880[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.008 0.63 11.1 5.2 1 23 81 104 81 104 0.95 2 25 0.26 20 6.4 0.4 3 23 131 152 131 152 0.98 3 25 0.013 1 10.4 0.3 2 23 175 196 174 196 0.96 4 25 1.2 96 4.3 2.5 1 23 200 222 200 222 0.82 5 25 0.11 9 7.5 0.4 1 23 226 249 226 249 0.82 6 25 0.0089 0.69 11.0 4.3 2 23 256 278 255 278 0.94 7 25 0.0062 0.49 11.5 0.4 1 23 285 308 285 308 0.91 8 25 5.7e-05 0.0044 17.9 2.7 1 23 314 336 314 336 0.98 9 25 1.2e-05 0.00097 20.0 2.9 1 23 342 364 342 364 0.98 10 25 0.27 21 6.4 1.5 1 23 422 444 422 444 0.94 11 25 0.016 1.2 10.2 0.0 2 23 473 495 472 495 0.93 12 25 0.016 1.2 10.2 0.2 3 23 517 538 515 538 0.93 13 25 0.00035 0.027 15.4 1.5 2 23 544 566 543 566 0.95 14 25 0.0012 0.093 13.7 1.1 1 23 571 594 571 594 0.96 15 25 0.33 26 6.1 0.2 2 23 597 619 596 619 0.96 16 25 0.0052 0.41 11.7 1.3 2 22 626 646 625 646 0.94 17 25 0.0015 0.12 13.4 1.0 1 23 704 727 704 727 0.93 18 25 0.14 11 7.3 0.1 3 23 756 777 754 777 0.92 19 25 0.046 3.6 8.7 0.2 3 23 801 823 799 823 0.94 20 25 0.00066 0.051 14.6 0.6 3 20 830 847 828 851 0.90 21 25 0.09 7.1 7.8 0.5 1 23 856 879 856 879 0.97 22 25 0.00044 0.034 15.1 0.2 2 23 885 907 885 907 0.94 23 25 0.00016 0.012 16.5 4.7 1 23 911 934 911 934 0.97 24 25 0.00055 0.043 14.8 0.6 2 23 941 962 940 962 0.96 25 25 0.018 1.4 10.0 3.8 1 23 968 990 968 990 0.97
Sequence Information
- Coding Sequence
- ATGAGCCGACTGCAGGTGCATATGAGAAGACGAGAAGAACTTCTTGTGCTCGTTATGCGGGAAGACGTTTTTCTCTCGGAGCGCTTTGAAGAGGCACGTGCGAAACGCCAAGAGGCGGCGCGCGAGGCCGCGAGTAAGTCCTCCATGACGGTCACCAAACGGAACAGCCTGATGAAACGAAACGCCGTTATCCTTCTAGAACACTCCACGGCTATGCCCTTCAAGTGGCAGCGGCAGAATTTCCtctgcttcttctgccacagaACCTTCAAAGACACTCGGCTACTGAAGGAACACACTAAGACTGATCACAAGACTTCTAGTTTAAAATCTGCCGTTTCTTACGTGAGAAGGGATGAGAAAGTCAAAGTGGACGTCTCTGCGCTCGGTTGTACTGTATGTAGTACACAACTGGAGAGTCTAGATAAACTAATTGAGCATTTGAAAACACAACATGGGAAGTGTTTCAACGAGGAATGCGGTTTTGGTCTGGTGCCTTACAAGCTACAGAATGAGGAATTGTCTTGTGCTGTGTGTAAAGAGGAGTTCCAGTACTTTGTTAAGTTGAATCAGCATATGAACGTTCATTTCGGTAGTTATATATGTGAGCTATGTGGCAAGTTCTTCTTGAGCCAAGATAGGCTTCGATGTCACTCTCTGAGGCACGGCTCAAAATTCCGTTGCAATATATGTTCGGAATCCTTCGATTCGCTCGTTCGACGGAATAGTCATGAAGCGAAAGTGCATAATAAGGATAAAATGATGAAGTGCCATTACTGTCCTGAGACATTCTCCAACTATTCGGTCAGGAAGAGGCACCACAATTTGGTGCACAATGTGGAGATGCAGAATTTCAACTGTCCAGTATGCGGGAAGAGCTTTCAGATCATGAGCAGGATGAAGGTGCATTACAAGGAGGTTCACGCGCGCGAGAAGAATTTCTCGTGTTCCATGTGCGATCAGAAATTCTTCTCCAGAACTCTGCTGCAGAAACATATGATAAAACACTGCGGTGAGAGAGTGCACCAGTGCGAGGTTTGTTTCAAGTCGTACGCGAGGAAGCAGACTTTGAAGGACCACATGAGGATACACTCCAAAGACAAAAAGTTCTGCTGTTTGGTCTGTAGCCAAGAGTTCGTGCAGAATAACAGTATAAAAGCGAGGAAATACAAGGGCTGCGAGTCCTCGTCGATGCGCAGGCGTAGGAACCTGCAGATACTTTTCAACAACACGACCATAATACCTTTCAAATGGCGCGGAAAGTATCTCTGTTTCTTCTGCAGCAAAGACATGGCTGAGTACTCGGAGCTCCGTAAGCACACTCGCTCACACGGAGAGTGCTCGACTATGGATCACTCTCTGAAAGTCCTCAAAGGAGGCCAAAACATGGAGATCAAAATAGACGTGTCTGACATCACTTGTGAAGTCTGCAACGAACCATTCCCCACTTCCGAGGAGATCCTCAACCATCTATTCGTGAAGCATAAGTTGGAGTATGACAAAGAAGTGGAAATGGCGATTGAGGAGTATAGACTTGCAGATCTTGCGTGTTTAACTTGTGGGGAAAAGTTTACGTACTTCGGATACTTGGTGTCGCACGTTAATAACAGTCATCCGAAAAAGTGTTTGATTTGTGACAAGTGTGATCAGAAGTTTAACAAGCAGAGGGATTTGTTTTCGCATATCAAGAATTACCATAGAGAGGGAGGTTACCAGTGCGAGATGTGTCCGCAGAGTTTCAGTTCGTTAAACATTCTGCGGAAGCACAGGAATAATAGGCATCTGACTAGATGTAACGTTTGCCAGTTGAAGCTGCCGTCAGCTGTTTTGAAGCAGAAACATATGGAGATGGAACATCCGGATGATGGGAGTCTGCAGTGTGACAACTGCTCCAAAGAGTTTCACACGAAACAAGGACTTAGGATGCACGTTAGGAAGTGCAAAGCGGAAGATGAATTGTTCGATATCGATATTAAGAAAGAGGAAGCGATGGAATACGATGCGAACTATGAGGAAATAAAACGGCCAAGCGTGAAACAGATAAGAGAGAATATCGTTATAGTGATTAATATGTCGACGGCTATACcttttaatttctataaaaacaagtttaattGCTTCTATTGTTCCAAAGATTTTTCTGATTCGGACTCTATGCGAGAGCATACGGTTATGGAGCACCCGGTGTGCGATGTGAAGCAGAAATGCATTCGGAAGTGCAGGGAATCGGTGGCTTGCGTTAAAATCGACATATCCTCCTTAGCTTGTAAGATCTGCTTCGAATCCATGAGTGATTTAGATAACTTGTTagatcatttaatattaaaacacgaAGCCAACTACGATAAGTCTATTACAACTTGCTTGCAGCCTTACAGACTGATCAAAGATCACATGGCTTGTCCTAATTGCCCTGGAGAAGTCTTCAGATTCTTCGGTACTTTGCTAAAGCATATGAATAAAAAGCAcactaataataacataatctgCGTATACTGCGGCCAGACTTTCAGGCGAGATCAGAATCTGAGAGTTCACATCTGGCGTCACCACAGGGACGGCAGGTTTAAATGCAGTGTATGCAATGCTGAATGTAACATTCCCTCAAGACTGTATATGCACATGGCGAGAGCTCACGGCGTGAAGGCGGCTAAATGCCCCAAATGTCCGGAGAGCTTCGCGACGCAGTATTTGAGGCAAAAGCATTTGATTGAAGCCCACGATTCTGGCCACAAATGCTCATACTGTGGCAAATTGTTCACTAGGAACTCGTTCATGCGGGACCATGTTAGGAGGACCCATCTTAAAGAGAAGAACGTGGAATGCTCGATATGTAGTATGAAGTTCTTCAATAATATCCTTCTGAGAAGGCATATGGTGAAGCACAGTGGTGAGAAGAATTTCCACTGCGATATGTGCGGAGAAAGATTCTTCTGGCGGAAGAGTCTTCGTACGCATATGACTAGGCATAACAAGCATATACAGTTGTAG
- Protein Sequence
- MSRLQVHMRRREELLVLVMREDVFLSERFEEARAKRQEAAREAASKSSMTVTKRNSLMKRNAVILLEHSTAMPFKWQRQNFLCFFCHRTFKDTRLLKEHTKTDHKTSSLKSAVSYVRRDEKVKVDVSALGCTVCSTQLESLDKLIEHLKTQHGKCFNEECGFGLVPYKLQNEELSCAVCKEEFQYFVKLNQHMNVHFGSYICELCGKFFLSQDRLRCHSLRHGSKFRCNICSESFDSLVRRNSHEAKVHNKDKMMKCHYCPETFSNYSVRKRHHNLVHNVEMQNFNCPVCGKSFQIMSRMKVHYKEVHAREKNFSCSMCDQKFFSRTLLQKHMIKHCGERVHQCEVCFKSYARKQTLKDHMRIHSKDKKFCCLVCSQEFVQNNSIKARKYKGCESSSMRRRRNLQILFNNTTIIPFKWRGKYLCFFCSKDMAEYSELRKHTRSHGECSTMDHSLKVLKGGQNMEIKIDVSDITCEVCNEPFPTSEEILNHLFVKHKLEYDKEVEMAIEEYRLADLACLTCGEKFTYFGYLVSHVNNSHPKKCLICDKCDQKFNKQRDLFSHIKNYHREGGYQCEMCPQSFSSLNILRKHRNNRHLTRCNVCQLKLPSAVLKQKHMEMEHPDDGSLQCDNCSKEFHTKQGLRMHVRKCKAEDELFDIDIKKEEAMEYDANYEEIKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFSDSDSMREHTVMEHPVCDVKQKCIRKCRESVACVKIDISSLACKICFESMSDLDNLLDHLILKHEANYDKSITTCLQPYRLIKDHMACPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCSVCNAECNIPSRLYMHMARAHGVKAAKCPKCPESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHVRRTHLKEKNVECSICSMKFFNNILLRRHMVKHSGEKNFHCDMCGERFFWRKSLRTHMTRHNKHIQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00018374; iTF_00752279; iTF_01503186;
- 90% Identity
- -
- 80% Identity
- -