Ufer029246.2
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- -
- Assembly
- GCA_950022985.1
- Location
- OX465545.1:2895650-2907371[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.058 5.5 8.5 4.7 1 23 238 261 238 261 0.94 2 25 0.014 1.3 10.4 0.3 2 23 333 354 332 354 0.96 3 25 1.5 1.4e+02 4.1 3.6 1 23 358 380 358 380 0.87 4 25 0.012 1.2 10.6 0.6 1 23 384 407 384 407 0.93 5 25 0.35 33 6.0 4.4 2 23 414 436 413 436 0.94 6 25 0.0077 0.73 11.3 1.0 1 23 443 466 443 466 0.95 7 25 0.00047 0.045 15.1 4.8 1 23 472 494 472 494 0.98 8 25 1.4e-05 0.0013 19.9 3.1 1 23 500 522 500 522 0.98 9 25 7e-05 0.0066 17.7 1.5 1 23 528 550 528 551 0.96 10 25 0.019 1.8 10.1 1.6 1 23 600 622 600 622 0.96 11 25 0.085 8.1 8.0 0.1 2 23 651 673 650 673 0.93 12 25 0.016 1.5 10.3 0.3 2 23 694 716 693 716 0.93 13 25 0.0015 0.14 13.5 1.4 2 23 722 744 721 744 0.95 14 25 0.00069 0.065 14.6 0.9 1 23 749 772 749 772 0.96 15 25 0.78 74 5.0 0.5 2 23 775 797 774 797 0.93 16 25 0.0013 0.12 13.7 1.2 2 22 804 824 803 824 0.95 17 25 0.0042 0.39 12.1 0.6 1 23 880 903 880 903 0.93 18 25 0.52 49 5.5 0.1 3 23 932 953 930 953 0.92 19 25 0.2 19 6.8 0.3 3 23 977 999 976 999 0.95 20 25 0.00083 0.079 14.3 0.6 3 20 1006 1023 1004 1027 0.90 21 25 0.13 12 7.4 0.5 1 23 1032 1055 1032 1055 0.97 22 25 0.00056 0.053 14.9 0.2 2 23 1061 1083 1061 1083 0.94 23 25 0.0002 0.019 16.3 4.7 1 23 1087 1110 1087 1110 0.97 24 25 0.0007 0.066 14.6 0.6 2 23 1117 1138 1116 1138 0.96 25 25 0.023 2.2 9.8 3.8 1 23 1144 1166 1144 1166 0.97
Sequence Information
- Coding Sequence
- ATGGATTTCGATGAAATTGTGGTTAAGGAAAGCCCGGGGCTATGCCGGTGCTGCCTCTCGGAGGGCTGCTACAAAGATATGGGTACCGAATACAATTGGATGAGTGAAAATGAAGTGTACGCCGATATGCTGTTGGAATGTTTCGATATCGGTATATCACAGCACAATGATGGACCAAACGGCCCTAACCGCCTCATCTGTGAAGTCTGCATCACCCGGCTCCGGGACGCGTGCAACTTCAAGAAGCAAGTGCTTGACTCGGAGAAGAAGTTCATAGACATGATTGGGAGAGGTGAATTCAGACCTAAAGTGCTAATCTACCAATCCCAAATGAAGACGGAGAGGGCTGACGATGTACTGGAGGAGGCAGAGGTGGAGTACCTCGACGAGGACTTAGTAGACTATGATGAGGACGACCTACCGCTCAAGAGAGAGGGCGCCAGCGTGTCCCTATCGGAGGTGGCCGCGGAGCCCCTGCCCGTGCCCAAACGGGGCCGGCCCAAGAAGACCGCCGTCAAACCCGAGAAGAAAAAGAAGACTGAAGAACGGCCCAAGGTCAAATCCGTCGTCAAAGgTCCAAAACGCGAAGAGTCGGAGGCCGCGAGTAAGTCCTCCCTGACCTCGACGAAACGTAACCGACTCATGAAGAGAAACGCCATTATAGTCATAGAAAACTCATCAGTCGTTCCGTTTAAATGGCACAGACAGAATTTCCTATGCTTTTTTTGCCATAGAACATTTAAAGACACTGAAAGATTGAGAGAACACACAAAATCAGACCATAAACTGTCAAGCATAAAGTCAGCTGTTTCATATTTAAGGAGAGACGAGAAAGTGAAAATTGACGTCAGTACACTTGATTGCAAAGCTTGCAATGTTAAAgtaaacaaattggatgaactGATTGACCATTTAGGAGAAGCacataataaaatgtttaaccCAGAACACGGTTATGGACTTGTGCCTTACAAACTTAATAACGAGGAGCTATTGACTTGTGCAGTATGTGACGAACAATTTCAGTATTTTGTAAAATTGAACCAGCACATGAATGAGCATTTTGGGAGTTACATATGTGATTTATGTGGACGATGTTTTCTCAGTCAGGACCGACTGAGATGCCACGCTCTAAGACACGGGGCTGGATTCCGCTGTAATATCTGCTCAGAATCTTTCGATTCACTTACTCAAAAGAATAATCACGAAGCTAAAGTTCACAATAAAGATAAAGCGATAAAGTGTTGCTACTGTGAAGAGTCATTTCCGAATTACACAATGCGGAAGAAACACCACAATTTAGTTCACAATGTGGAACTGCAAGAGTTCCACTGTCCAGTCTGTGGAAAGAACTTTCAGATAATGAGTAAGATGAAGGTGCATCTGAAAGAGGTCCATATACGGGAGAAGAATTATTCATGTTCAATGTGCGATCAAAAGTTCTTCTCGAAGACGCATGTGCAAAAACACATGATCAAACATTATGGCGAGAGGATACATCGGTGTGAGATCTGCTTCAAGTCGTACGCGAGGAAGCAAACTTTGAAAGATCACATGAGGATCCATAGCAAAGATAAGAAGTTTAGGTGTCTTATTTGCGATCAGGAATTTGTACAAAATAACAGTCTTCGATTGCATTTGAAAGTACACCACACGGACGATCCAGGAATATCCGTTGAGGAATGTAAAAAACCGCGCAAATTCAAAGGCTGTGAATCGTCCTCCACACGCAGACGTAGGAACCTTCAGATACTTTTCAACAACACATCCATTATTCCTTTCAAATGGCGGGGAAAGTATCTTTGCTTCTATTGCAGTAAAGATATATCAGTGTACTCTGAATTGCGAAAGCACACGAAATCTCACGGCCAGTGCTCTACAAAAGACCACTCGCTAAAAGTGCTTAAAGGGGGTCAAAATatggaaataaaaatagacGTATCAGACATCACTTGTGATATTTGCAGCGAACCATTTCCCACTTTCGACGAAATACTCAACCATCTGTACGTCAAACACAAATTGGACTATGATAAAGAAGTAGAGATGGCTATTGAGGAATACAGATTGGCAGATCTTTCTTGTCTTTTGTGCGGCGAAAAATTCACATATTTCGGCTATTTAGTATCTCATGTAAACAATAGTCATCCTAAAAAGTGTCTGATTTGCGACAAATGTGAACAGAAATTCAATAAACAGCGCGACCTCTTTTCCCACATCAAGAATTATCACAGGGAAGGTGGCTACCAGTGCGATATATGTCCACAGAGTTTTAGCTCGCTGAACATTCTCCGAAAACATAGAAATAATCGGCACATGACTAGATGCAATATATGCCATTTGAAACTCCCATCGGCTGTTTTAAAACAGAAACACATAGAGTTGGAGCATCCTGATGATGGTAGTCTGCAATGTGACATTTGCTCCAAAGAATTTCATACAAAGCAAGGCCTGAAGATGCATCTTAGAAAATGCAAAGGAGAAGACGAGTACGACGTCGAGATAAAGAAAGAAGAGGCAAGCTACGAACAGAGTTATGAAGAAGCGAAGAGACCGAGCGTTAAACAAATAAGACAGAACATTGTTATTGTTATCAATATGTCGACGGCCATACCTTTTAACTTTTATAAGAACAAATTCAATTGCTTTTATTGTTCGAAAGATTTCGCAGATTCAGATTCAATGAGAGAACACACAGTCATGGAACATCCTGTTTGTGACGTTAAACAAAAGTGTATTAGAAAATGCAGGGAATCAGTGGCGTGTGTCAAAATTGACATATCATCGTTAGCTTGTAAGATTTGCTTCGAATCTATGAGCGATTTGGATAGTCTACTagatcatttgattttgaaacatGAAGCGAACTATGATAAATCAATCACGACTTGCTTACAACCTTATAGACTGATAAAAGATCACATGTTGTGTCCTAATTGTCCAGAAGAAGTGTTTAGGTTTTTCGGTACTTTACTAAAGCATAtgaataataaacatactaatAACAACATAATTTGTGTATACTGTGGTCAAACGTTCAGAAGGGATCAAAATTTGCGCGTCCATATATGGCGTCACCACAGGGACGGCAGGTTTAAGTGCAGTCTTTGCGATGCCGAATGCAATATACCTTCTAGACTGTATATGCACATGGCGAAAGCTCACGGTGTGAAAGCGGCTAAATGTCCAAAGTGCCCTGAAAGTTTTGCCACCCAGTATCTGAGGCAGAAGCATTTGATAGAAGCACACGATTCCGGCCACAAGTGTTCTTACTGCGGCAAGCTGTTCACTAGGAATTCCTTCATGCGCGATCACGTCAGGAGAACCCATCTGAAAGAAAAGAACGTTGAATGCTCCATTTGCAGCATGAAGTTCTTCAACAATATTCTTCTCAGACGGCACATGGTGAAACATAGTGGTGAGAAGAATTTCCACTGCGACATGTGTGGGGAAAGATTTTTCTGGCGGAAAAGTTTACGAACGCACATGACGAGACATAATAAGCATATACAGCTGTAG
- Protein Sequence
- MDFDEIVVKESPGLCRCCLSEGCYKDMGTEYNWMSENEVYADMLLECFDIGISQHNDGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFIDMIGRGEFRPKVLIYQSQMKTERADDVLEEAEVEYLDEDLVDYDEDDLPLKREGASVSLSEVAAEPLPVPKRGRPKKTAVKPEKKKKTEERPKVKSVVKGPKREESEAASKSSLTSTKRNRLMKRNAIIVIENSSVVPFKWHRQNFLCFFCHRTFKDTERLREHTKSDHKLSSIKSAVSYLRRDEKVKIDVSTLDCKACNVKVNKLDELIDHLGEAHNKMFNPEHGYGLVPYKLNNEELLTCAVCDEQFQYFVKLNQHMNEHFGSYICDLCGRCFLSQDRLRCHALRHGAGFRCNICSESFDSLTQKNNHEAKVHNKDKAIKCCYCEESFPNYTMRKKHHNLVHNVELQEFHCPVCGKNFQIMSKMKVHLKEVHIREKNYSCSMCDQKFFSKTHVQKHMIKHYGERIHRCEICFKSYARKQTLKDHMRIHSKDKKFRCLICDQEFVQNNSLRLHLKVHHTDDPGISVEECKKPRKFKGCESSSTRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDISVYSELRKHTKSHGQCSTKDHSLKVLKGGQNMEIKIDVSDITCDICSEPFPTFDEILNHLYVKHKLDYDKEVEMAIEEYRLADLSCLLCGEKFTYFGYLVSHVNNSHPKKCLICDKCEQKFNKQRDLFSHIKNYHREGGYQCDICPQSFSSLNILRKHRNNRHMTRCNICHLKLPSAVLKQKHIELEHPDDGSLQCDICSKEFHTKQGLKMHLRKCKGEDEYDVEIKKEEASYEQSYEEAKRPSVKQIRQNIVIVINMSTAIPFNFYKNKFNCFYCSKDFADSDSMREHTVMEHPVCDVKQKCIRKCRESVACVKIDISSLACKICFESMSDLDSLLDHLILKHEANYDKSITTCLQPYRLIKDHMLCPNCPEEVFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCSLCDAECNIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHVRRTHLKEKNVECSICSMKFFNNILLRRHMVKHSGEKNFHCDMCGERFFWRKSLRTHMTRHNKHIQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00408648;
- 90% Identity
- -
- 80% Identity
- -