Gpyl028144.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- -
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000035.1:3271952-3276383[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0054 0.52 11.8 4.6 1 23 77 100 77 100 0.94 2 26 0.38 37 6.0 0.1 2 23 126 148 125 148 0.95 3 26 0.019 1.9 10.1 0.2 2 23 171 192 170 192 0.96 4 26 0.27 26 6.5 2.0 1 23 196 218 196 218 0.83 5 26 0.13 12 7.5 0.4 1 23 222 245 222 245 0.82 6 26 0.043 4.1 9.0 5.3 2 23 252 274 251 274 0.94 7 26 0.007 0.67 11.5 0.4 1 23 281 304 281 304 0.91 8 26 0.0033 0.32 12.5 1.4 3 23 312 332 310 332 0.98 9 26 1.4e-05 0.0013 20.0 2.9 1 23 338 360 338 360 0.98 10 26 0.00031 0.03 15.7 1.2 1 23 366 388 366 389 0.95 11 26 0.00037 0.036 15.5 0.8 1 23 439 461 439 461 0.98 12 26 0.036 3.5 9.2 0.3 3 23 491 512 489 512 0.95 13 26 0.02 1.9 10.0 0.4 2 23 533 555 532 555 0.94 14 26 0.0014 0.13 13.7 1.8 2 23 561 583 560 583 0.94 15 26 0.0016 0.15 13.5 1.5 1 23 588 611 588 611 0.96 16 26 1.2 1.2e+02 4.4 0.1 2 23 614 636 613 636 0.91 17 26 0.032 3 9.4 2.9 2 21 643 662 642 663 0.93 18 26 0.0017 0.16 13.4 1.1 1 23 721 744 721 744 0.93 19 26 0.46 45 5.7 0.1 3 23 773 794 771 794 0.92 20 26 0.029 2.8 9.5 0.2 3 23 818 840 817 840 0.95 21 26 0.00073 0.071 14.5 0.6 3 20 847 864 845 868 0.90 22 26 0.018 1.7 10.2 1.2 1 23 873 896 873 896 0.97 23 26 0.0014 0.13 13.7 0.3 2 23 902 924 902 924 0.94 24 26 9e-05 0.0087 17.4 3.8 1 23 928 951 928 951 0.97 25 26 8e-05 0.0077 17.6 0.9 2 23 958 979 957 979 0.96 26 26 0.54 51 5.5 3.4 1 23 985 1007 985 1007 0.97
Sequence Information
- Coding Sequence
- ATGGCCCGAGCCCCACTATGCGTCCTCCGGCAGTTGATTAAATTTGTAGGAGTAAGAGCCTTCCGCACGCCCCCGAACTCAAAAGgtccaatacgccaagattcggcATCTGAGGCGGCGAGTAAGTCCTCCATGACGGCCACCAAGCGAAACCGGCTCATGAAGCGTAACGCCGTTACTCTCCTAGAAAACTCCACCGTCATACCCTTCAAATGGCAGCGGCAGAGCTTCCTCTGTTTCATCTGCCATAGAGCATTCAAAGACACCCACCTCCTGAAAGAACACACAAAGTCAGAACACAAGATGTCTAGTTTAAAATCGGCTGTTTCGTATGTGAGGAGGgacgaaaaaattaaaattgatgtcACGACCCTCAACTGTAGAATCTGTGATGTACAATTGCAGAATCTTGATAAATTAGTTGATCATCTTCGAGTTGAGCATGGGAAGAGCTTTAACGAGGAATGCGGCTACGGCCTGGTGCCTTACAATCTTCGGAACGACGATCTAACGTGTGCAGTGTGTGCAGAGAAGTTTGATTACTTCGTGAAGTTGAATCAGCACATGAACGTCCACTTCGGAAGCTACATATGCGAGCTTTGCGGCAAGTCGTTCTTGAGTCAGGACAGACTCAGATGCCACTCTCTAAGGCATGGGTCTAAATTCCGTTGTAATATTTGTTCGGAGTCTTTCGAGTCGTTGGTGAGAAGAAACAGCCATGAAGCCAAAGTTCACAATAAGGAAAAGATGATGAAGTGTCACTATTGTTCAGAGACTTTCACTAATTACTCTGTTAGGAAAAGGCATCACAATTTGGTGCATAATGTCGAAATGCAGAAGTTCAATTGTCCGGTTTGCGGGAAGAGTTTTCAGATAATGAGCAGGATGAAGGTGCATTACAAAGAGGTTCATATGCGGGAGAAGAACTTTGGGTGTTCGATGTGTGACCAGAAGTTCTTTTCGCGGACACTCGTGCAGAAGCACATGATCAAGCATTGTGGCGAGAGAGTGCACCAGTGTGAGGTGTGCTTTAAGTCGTATGCGCGAAAGCAGACGCTTAAGGATCACATGAGAATACATAGTAAAGATAAAAAGTTCAGCTGTGTGGCTTGCAACCAGGAGTTTGTTCAAAATAATAGTCTTCGGTTACACATGAGGGTGCATCATCCTGATTATAGAAAAATTTCCATTTCAGATACAAACGTCGTACGTACCCGGTACAAGGGCTTCGAGTCCCCGTCGATGCGCAGGCGCAAGAACCTGCAGTTACTTTTCAACAACACCACGATAATACCATTCAAATGGCGCGGAAAGTATATATGTTTCTACTGCAGCAAAGACGTTGTAGACTACTCAAACTTGCGTGAGCACACCCGCTCCCACGGTGAATGCTCTACCGGGGATCATTCGTTGAAAATCCTCAAAGGAGGCCAGAACATGGAGATCAAAATTGACGTGTCCGATATTATCTGCGACCTCTGCAAAGTGTCCTTCCCCACCTGCAAAGAGGTTCTCAACCATCTTAACGTCGAACACAAGCTCGAGTATGATAGAGAAATAGATATGGCGATAGAGGAGTACAAACTCGCGGATCTATCGTGCCTGGTGTGTAGTGAGAAGTTCAAGTACTTCGGCAATCTGGTATCGCACGTGAACAACAGCCACCCGAAGAAGTGTCTGATGTGTGACAAATGTGACCAGAAATTTAACAAGCAGAGAGATTTATTCTCTCACGTCAAAAATTATCATAGGGAGGGTGGGTATAAGTGCGAAATGTGTCCGCAGAGTTTTAGCTCGCTAAACATTCTGCGCAAACACAggaataataaacatttgacGAGTTGTGACATTTGCCAATTGAAGTTACCTTCCGCGAGTTTAAAGCAGAAACACGTGGAACTAGAGCATCCGGACGATGGAAGTCTCCAATGCGACAATTGCTTCAAAGAATTTCACACAAAACATGGACTCAGGATGCATGTCAAAAAATGTAAGGGCGAAAACGATATGTACGACATCAAAATAAAGATAGAAGGAGTTACGGACTACGATGGTACTTACGAAGATGTAAAAAAACCTAGCGTCAAACAGATTAGGGAAAACATCGTAACAATACTCAATATGTCGACGGTTATACCTTTCaatttcttcaaaaacaaattcaactGCTTCTATTGTTCTAAAGATTTCACCGATTCAGATTCAATGAAAGAACACACCGTGATGGAGCATCCGATTTGCGACGTAAAGCAGACATGCATCAGGAAATGCAGGGAATCTGTGACGTGTGTCAAAATTGACGTCTCTTCCTTAGCTTGTAAGATTTGCTTTGAATCCATGACCGATTTGGACAGTCTACTCGACCATTTAATCTTAAAACATGAAGCCAAGTACGATAAATCGATCACAACTTGCCTGCAGCCATATCGATTGATCAAGGAAAACATGGCTTGCCCCAACTGTCCGGGAGAAGTGTTTAGGTTCTTCGGAACATTGTTGAAGCATATGAATACAAAGCACACTGACAATAATATTATCTGCGTGTATTGCGGTCAGACTTTTAGGCGCGATCAGAATTTGAGGGTCCATATCTGGCGACACCACAGGGAAGGCAGTTTTAAGTGTAGCCTTTGCGACGCTGACTGCAATATTCCGTCTAGACTAAACAAGCATATGGCGAAAACTCACGGAATTAAGGCGGCGAAATGCCCGAAGTGTCCGGAGAGTTTCGGTTCGCAATATTCGAGGCAGAAGCATTTGATAGAGGTCCACGAATCGGGGCATAAGTGCTCCTACTGCGGCAAGTTGTTCACGAGAAACTCTTTCATGCGGGAGCATGTTAGGAGGATTCATCTGAAAGAGAAGAATGTGGAATGCTCAATCTGCAACAGGAAGTTCTTCAACAATATTCTTCTCAGGCGCCACATGGTGAAACACAGTGGAGAGAAGTATTTCCACTGCGATGTGTGCGGGGATAGGTTCTTTTGGAGGAAGAGTCTTCGCACGCACATGACGAAGCATAATAAAGAAGTGCAAATGTAA
- Protein Sequence
- MARAPLCVLRQLIKFVGVRAFRTPPNSKGPIRQDSASEAASKSSMTATKRNRLMKRNAVTLLENSTVIPFKWQRQSFLCFICHRAFKDTHLLKEHTKSEHKMSSLKSAVSYVRRDEKIKIDVTTLNCRICDVQLQNLDKLVDHLRVEHGKSFNEECGYGLVPYNLRNDDLTCAVCAEKFDYFVKLNQHMNVHFGSYICELCGKSFLSQDRLRCHSLRHGSKFRCNICSESFESLVRRNSHEAKVHNKEKMMKCHYCSETFTNYSVRKRHHNLVHNVEMQKFNCPVCGKSFQIMSRMKVHYKEVHMREKNFGCSMCDQKFFSRTLVQKHMIKHCGERVHQCEVCFKSYARKQTLKDHMRIHSKDKKFSCVACNQEFVQNNSLRLHMRVHHPDYRKISISDTNVVRTRYKGFESPSMRRRKNLQLLFNNTTIIPFKWRGKYICFYCSKDVVDYSNLREHTRSHGECSTGDHSLKILKGGQNMEIKIDVSDIICDLCKVSFPTCKEVLNHLNVEHKLEYDREIDMAIEEYKLADLSCLVCSEKFKYFGNLVSHVNNSHPKKCLMCDKCDQKFNKQRDLFSHVKNYHREGGYKCEMCPQSFSSLNILRKHRNNKHLTSCDICQLKLPSASLKQKHVELEHPDDGSLQCDNCFKEFHTKHGLRMHVKKCKGENDMYDIKIKIEGVTDYDGTYEDVKKPSVKQIRENIVTILNMSTVIPFNFFKNKFNCFYCSKDFTDSDSMKEHTVMEHPICDVKQTCIRKCRESVTCVKIDVSSLACKICFESMTDLDSLLDHLILKHEAKYDKSITTCLQPYRLIKENMACPNCPGEVFRFFGTLLKHMNTKHTDNNIICVYCGQTFRRDQNLRVHIWRHHREGSFKCSLCDADCNIPSRLNKHMAKTHGIKAAKCPKCPESFGSQYSRQKHLIEVHESGHKCSYCGKLFTRNSFMREHVRRIHLKEKNVECSICNRKFFNNILLRRHMVKHSGEKYFHCDVCGDRFFWRKSLRTHMTKHNKEVQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00408648;
- 90% Identity
- -
- 80% Identity
- -