Basic Information

Insect: Cyaniris semiargus
Gene Symbol: -
Assembly: GCA_905187585.1
Location: LR994569.1:1459148-1464486[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.8e-07 3.7e-05 24.4 3.0 1 23 122 144 122 144 0.98

2 17 0.0001 0.0076 17.1 1.9 1 23 150 172 150 172 0.98

3 17 0.00032 0.025 15.5 0.6 1 23 178 200 178 200 0.96

4 17 8.7e-05 0.0066 17.3 0.8 1 23 205 227 205 227 0.98

5 17 1e-05 0.00077 20.2 0.7 1 23 233 255 233 255 0.99

6 17 3.1e-05 0.0023 18.7 0.3 2 23 260 281 259 281 0.97

7 17 0.00012 0.0093 16.8 3.7 1 23 287 309 287 309 0.98

8 17 2e-06 0.00015 22.4 2.6 1 23 315 337 315 337 0.98

9 17 2.3e-05 0.0018 19.1 0.7 1 23 343 365 343 365 0.99

10 17 0.0059 0.45 11.5 0.1 1 23 371 393 371 393 0.95

11 17 8.5e-07 6.4e-05 23.6 1.2 1 23 399 421 399 421 0.98

12 17 0.0092 0.7 10.9 5.5 1 23 427 449 427 449 0.98

13 17 1.4e-05 0.0011 19.8 2.6 1 23 455 477 455 477 0.98

14 17 0.0027 0.2 12.6 6.2 1 23 483 505 483 505 0.98

15 17 7.8e-07 5.9e-05 23.7 1.3 1 23 511 533 511 533 0.98

16 17 2.9e-06 0.00022 21.9 2.8 1 23 539 561 539 561 0.98

17 17 1e-05 0.00077 20.2 4.8 1 23 567 589 567 589 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.8e-07	3.7e-05	24.4	3.0	1	23	122	144	122	144	0.98
2	17	0.0001	0.0076	17.1	1.9	1	23	150	172	150	172	0.98
3	17	0.00032	0.025	15.5	0.6	1	23	178	200	178	200	0.96
4	17	8.7e-05	0.0066	17.3	0.8	1	23	205	227	205	227	0.98
5	17	1e-05	0.00077	20.2	0.7	1	23	233	255	233	255	0.99
6	17	3.1e-05	0.0023	18.7	0.3	2	23	260	281	259	281	0.97
7	17	0.00012	0.0093	16.8	3.7	1	23	287	309	287	309	0.98
8	17	2e-06	0.00015	22.4	2.6	1	23	315	337	315	337	0.98
9	17	2.3e-05	0.0018	19.1	0.7	1	23	343	365	343	365	0.99
10	17	0.0059	0.45	11.5	0.1	1	23	371	393	371	393	0.95
11	17	8.5e-07	6.4e-05	23.6	1.2	1	23	399	421	399	421	0.98
12	17	0.0092	0.7	10.9	5.5	1	23	427	449	427	449	0.98
13	17	1.4e-05	0.0011	19.8	2.6	1	23	455	477	455	477	0.98
14	17	0.0027	0.2	12.6	6.2	1	23	483	505	483	505	0.98
15	17	7.8e-07	5.9e-05	23.7	1.3	1	23	511	533	511	533	0.98
16	17	2.9e-06	0.00022	21.9	2.8	1	23	539	561	539	561	0.98
17	17	1e-05	0.00077	20.2	4.8	1	23	567	589	567	589	0.98

Sequence Information

Coding Sequence: ATGGGAGAAGGGACGTGTTTTATATGTTTTGTTGAAAACACTAAAGTATTCGACATCAAAAACACCAATTTACAACTTGTGTACGAACAAATATTGGAGTCAAAGACTCAAAGTGATGTATACTTTGTTTGCAATATTTGTTATGTGAGGCTGCTACAGTGTAAAACGTTGATACAACAAATTAAGAAAGGAAAGGAAAGAGCTGCTGATCAGACTGAACCAAGGCCTGTCTTTCGATGGACGTCCACAACTTTCAATATAACATCCATCGAACCCGAGTATGCCACCATCAAACAGGAGAAGTCTGGAGATACACCCGAACATGCTGAATCTATAGTCATAACTTTGACACCCATCGAGCGATTCACATGTGATATTTGCAACAAGAAGTTTCGTACGAAAAACTACTTGAAGACACACATAAAGATACACAGTGGGGAACAATTTTATCCCTGTAATATGTGCAGTAAGAAATTCCTCCAGAAAAGCAGCTTGAAGATCCACAGAAGAGAACATACGGGTGAGAAACCGTATAACTGTCAGCTGTGCGATAAAAAGTTTGCCCGTGGCTACTTCTTAAGGGTGCATCAGATAGCCCACGCAGAGAAGAAGTACACTTGTGATGTATGCAGTAAGAGGTTTAAGTTGGAAAAGTCCTTAATCGCTCACAAAAGAGCACACGCAGATGACAAACCGTTTACATGTGGTGTATGCGGAAAGAGTTACTCCCAGAAAAATATTCTAAAGGCGCATCTAAAAACGCACACAAGGGAACTACAATGCGATTCTTGCGATAAAGTATTTGCGAATACGAAAAATTTGGAAATCCACAACCGTATACACTTGGGTGACAAACCGTACTCCTGCACGCTTTGTGACATGAAATTCAGACATAATACCTCTCTGAAAGTCCACACGATGAACCATACAGGCGAGAAACCGCACACCTGTGACACATGTGAAAAAAAATTCAGCCAAAAGTCCGCTTTAAGCGAGCACATGCTAACACATACAGGCGAGAAACCGTACACTTGTGACGTATGCGGGAACAGCTACAGCGGCCGTGGGTATTTGAAGAAGCACAAGAGAATACATACGGGCGAGAGACCGTATACTTGTGATATATGCTTTAAAAGTTTCACAGTTATCGGCATACTAAAAGAACATGTGGCCACGCATAAAAATGAAAAGTTATTCAGCTGTAACGTCTGTGGTAAGAAGTTCTCGCAGAAAAAAAACGTGAGAGTACATGAGAGGATCCACAGCGGAGTCAAACCGTACTCCTGTGACGTCTGCTGCCGTTCCTTCTCGCATAAGAATGGATTGCGCGCACACAAGACAACGCACAGCTCAGAGAAACCGTACACTTGTGATATATGCAGCAAACAGTTCAAACAGATTGGCAACTTGAAGCATCATTCTCGAATTCATACCGGAGAAAAGCCGTTCGTATGTGAAACCTGTCATAGCAGATTTAGTCAGTTAAGTACGCTACACAAGCATAAACTAACTCATACGGATGAGAAACCGTTTGTATGTGAGCTCTGTGATAAACGGTTTAGTCGACGGGGTTCATTAGTGAAACATAACAGAACGCACACGGGTGAAAAGCCATATGTATGTGATATATGCCAACAGAGATTCTCACAGAATTCCTCGCTGCATACACACAGAAGAATTCATACTGGTGTGAAGCCCCACACTTGTAATGTGTGTTACAAGTCTTTTATTCAAACCAGCTCGTTAAATAGACATAGAAAGACCCATGGTGATTATTAG
Protein Sequence: MGEGTCFICFVENTKVFDIKNTNLQLVYEQILESKTQSDVYFVCNICYVRLLQCKTLIQQIKKGKERAADQTEPRPVFRWTSTTFNITSIEPEYATIKQEKSGDTPEHAESIVITLTPIERFTCDICNKKFRTKNYLKTHIKIHSGEQFYPCNMCSKKFLQKSSLKIHRREHTGEKPYNCQLCDKKFARGYFLRVHQIAHAEKKYTCDVCSKRFKLEKSLIAHKRAHADDKPFTCGVCGKSYSQKNILKAHLKTHTRELQCDSCDKVFANTKNLEIHNRIHLGDKPYSCTLCDMKFRHNTSLKVHTMNHTGEKPHTCDTCEKKFSQKSALSEHMLTHTGEKPYTCDVCGNSYSGRGYLKKHKRIHTGERPYTCDICFKSFTVIGILKEHVATHKNEKLFSCNVCGKKFSQKKNVRVHERIHSGVKPYSCDVCCRSFSHKNGLRAHKTTHSSEKPYTCDICSKQFKQIGNLKHHSRIHTGEKPFVCETCHSRFSQLSTLHKHKLTHTDEKPFVCELCDKRFSRRGSLVKHNRTHTGEKPYVCDICQQRFSQNSSLHTHRRIHTGVKPHTCNVCYKSFIQTSSLNRHRKTHGDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01248388; iTF_00164567;
90% Identity: iTF_00934041;
80% Identity: -