Lbel014735.1
Basic Information
- Insect
- Lysandra bellargus
- Gene Symbol
- -
- Assembly
- GCA_905333045.1
- Location
- HG995329.1:2247244-2253005[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.9e-06 0.00016 22.6 3.0 1 23 197 219 197 219 0.98 2 17 0.00028 0.023 15.8 2.4 1 23 225 247 225 247 0.96 3 17 6.1e-06 0.0005 21.0 0.7 1 23 253 275 253 275 0.96 4 17 0.00011 0.0088 17.1 0.8 1 23 280 302 280 302 0.98 5 17 1.5e-06 0.00012 22.9 0.5 1 23 308 330 308 330 0.99 6 17 8.1e-05 0.0066 17.5 0.1 2 23 335 356 334 356 0.96 7 17 0.00015 0.012 16.6 3.7 1 23 362 384 362 384 0.98 8 17 1.6e-06 0.00013 22.8 2.2 1 23 390 412 390 412 0.97 9 17 2.9e-05 0.0024 18.9 0.7 1 23 418 440 418 440 0.99 10 17 0.0073 0.6 11.3 0.1 1 23 446 468 446 468 0.95 11 17 1.3e-05 0.0011 20.0 1.0 3 23 476 496 474 496 0.98 12 17 0.0064 0.52 11.5 5.5 1 23 502 524 502 524 0.98 13 17 1.8e-05 0.0015 19.6 2.6 1 23 530 552 530 552 0.98 14 17 2.5e-05 0.002 19.1 3.8 1 23 558 580 558 580 0.98 15 17 9.3e-07 7.6e-05 23.6 1.4 1 23 586 608 586 608 0.98 16 17 5.6e-06 0.00046 21.2 2.9 1 23 614 636 614 636 0.98 17 17 1.9e-05 0.0016 19.5 3.9 1 23 642 664 642 664 0.98
Sequence Information
- Coding Sequence
- ATGTCACGCAATGAAGAGCCAGAAGATGCTTTAAAAGCTAAGTTTCAAAAGGCGATTACGAAAAAGAAGCCTGTAGTGTATTATGACTGCAAAGAGCCTGGACATAAGAGACCGGAGTGTCCACTTCGTAAGAGAAAAGAAAGAGCTAAAGAAAATACTGCTCTTACGGTGCTGGCTGTCTCTGAAAACAAGAAAGATGTTTGGTTCATTGACTCGGGTGCGTCAACACATTTAACTTCGAGGTTGGACTGGCTATCTGACGTAAAAAACGTGAATTTCGGAAAGGTTACTGTTGCTAATGGTGATGAGATTCAATGTCAGGCTATTGGTAATATTCAAAGTGATGCATACTTTGTTTGCAATATTTGCTATGTGAGGTTGCTACAGTGTAAAACATTGATACAACAAATTAAAGAAGGAAAGGAAAGAGCTGCTGATCAGACTGAGTCAAGGCCTGCTGTACGATGGACGTCCATGACTTTCGACATAACATCCATTGAACCCAAGTATGCCAACAAGCAGGAGAAGTCTGGAGATACACCTGAACATGCTGAGTATATAGTTATAACTTTGACACCCATCGACCGATTCACATGTGATATTTGCAACAAAAAATTCCGAACGAAAAACTACTTGAAGACACACGTAAAGATACACAATGGGGAACAACCTTATCTCTGTAATATGTGCAATAAAAAATTCCTTCAAAAAAGCAGCTTAAAGATCCACAGAAGAGAACATACAGGTGAGAAACCATACAACTGTGAACTGTGCAATAAAAAGTTTGCCCGTAGCTACTCTTTGAGGGTGCATCAGATAGCCCACAAAGAGAAGAAGTACACTTGTGATGTATGCAGTAAGAGGTTCAAGTTGGAAAAGTCTTTAATCGCTCACAAAAGAGCACACAGAGGTGACAAACCGTTTACCTGTGGTGTATGCGGGAAGAGTTACTCCCAGAAAAGTATACTAAAGGCGCATATTAAAACGCACACGAGGAATCTACAATGCGATGCTTGCGATAAAGTATTCGCGAATACGAAAAATTTAGAAGTCCACAACCGTATACACCTAGGTGACAAACCGTACTCCTGCACGCTTTGTGACATGAAATTCAGACACAATACCTCACTGAAAGTCCACACGATGAATCATACGGGTGAGAAACCGCACTCCTGTGATGTGTGCCAGAAAAAATTCAGTCAAAAGTCCGCTTTAAGTGAGCACATGCTAACACATACAGGCGAGAAACCATACACTTGTGATGTATGCGGGAACAGCTACAGCGGTCGAGGGTATTTGAAGAAGCACAAGAGAATACACACGGGTGAGAGACCGTATACCTGTGATATATGCTTTAAAAGTTTCACAGTCATCGGCATATTAAAAGAACACGTGGCCACGCATAAAAATGAAAAGTTATTCGGTTGTAACCTCTGTGGTAAGAAGTTCTCGCAGAAAAAAAATGTGAGGGTACACGAGAGAATCCACAGCGGAGTCAAACCGTACTCTTGTGACATCTGCTGCCGTTCCTTTTCGCATAAGAATGGATTGCGCGCACACAAGACAACACATAGCTCAGAGAAACCGTACACCTGTGATATATGCAGCAAACAGTTCAAACAGATAGGCAACTTGAAGCATCACTCTCGAATTCATACCGGAGAAAAACCATTTGTATGTGAAACCTGTGATAGAAGATTCAGTCAGTTGAGTACGCTACACAAGCATAAACTAACTCACACAGATGAGAAACTGTTTGAATGTGAGTTGTGTGATAAACGGTTTAGTCGACGGGGTTCATTAGTGAAACATAACAGAACACACACGGGTGAAAAGCCATATGTGTGTGATATATGTCAACAGAGATTCTCACAGAATTCCACGCTGCACACACACAGAAGAATTCATACTGGTGTGAAGCCCCACACTTGTGATGTGTGTTACAAGTCTTTTATTCAAACCAGCTCGCTTAATAGACATAGAAAGATGCATGGTGATTATTAG
- Protein Sequence
- MSRNEEPEDALKAKFQKAITKKKPVVYYDCKEPGHKRPECPLRKRKERAKENTALTVLAVSENKKDVWFIDSGASTHLTSRLDWLSDVKNVNFGKVTVANGDEIQCQAIGNIQSDAYFVCNICYVRLLQCKTLIQQIKEGKERAADQTESRPAVRWTSMTFDITSIEPKYANKQEKSGDTPEHAEYIVITLTPIDRFTCDICNKKFRTKNYLKTHVKIHNGEQPYLCNMCNKKFLQKSSLKIHRREHTGEKPYNCELCNKKFARSYSLRVHQIAHKEKKYTCDVCSKRFKLEKSLIAHKRAHRGDKPFTCGVCGKSYSQKSILKAHIKTHTRNLQCDACDKVFANTKNLEVHNRIHLGDKPYSCTLCDMKFRHNTSLKVHTMNHTGEKPHSCDVCQKKFSQKSALSEHMLTHTGEKPYTCDVCGNSYSGRGYLKKHKRIHTGERPYTCDICFKSFTVIGILKEHVATHKNEKLFGCNLCGKKFSQKKNVRVHERIHSGVKPYSCDICCRSFSHKNGLRAHKTTHSSEKPYTCDICSKQFKQIGNLKHHSRIHTGEKPFVCETCDRRFSQLSTLHKHKLTHTDEKLFECELCDKRFSRRGSLVKHNRTHTGEKPYVCDICQQRFSQNSTLHTHRRIHTGVKPHTCDVCYKSFIQTSSLNRHRKMHGDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00935013;
- 90% Identity
- iTF_00935013; iTF_00404018; iTF_01248388;
- 80% Identity
- -