Cqui002747.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_015732765.1
- Location
- NC:108359473-108482161[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-110 3.4e-106 354.6 34.1 1 299 239 538 239 539 0.89 2 2 0.075 1.1e+03 -1.7 2.8 209 244 557 591 541 612 0.61
Sequence Information
- Coding Sequence
- aTGGACAGTCCCGGCGCTGTGGGAAGGCGTCGCGGCAACTCGCGGATCAATGCCGAGGACCAGGCGCTCGACCAGATCGCGAAGGAGGTTCTAAACCAGTTCTGGAGgaggcaaaacaaaacaaaaatcacaatGAGTAGCGACATCAAGCTGAGTATTAGTGAGGACGAGCGACATTTGtaccaccatcaccaccaccaccaccatcttgGCGGTACGAACGGTGTTGTCAACGGTGAAGTGCTCGAGTTTGTGATGGGTTCCCAGTACGCCAAGGATCCGGAGCAATCCGGTAGTGTCGGCGAGGAAGAGGATCGCGACGGGGAGTTTTACAGCTTCGAGCACAGTGAAGATCTGGAACGGCTCGGGCTGGGGCTGACGGAAGAGTTGAAGATCCGGGAGTCGAACGAACGGCTGGACTACAATCGGAACGATTTGAGCgggaagcagcagcagctgctcaATGGGGACAGTTCGACGCCCACGAAGGGAAGTGACCGGAGACTGTCGGCTGGGAGTAGTTTGGCGACGTCGGCGAACGATGAGGTGGATCGGAGTTATGGCGAGGATGGCGGGTACGAGGCGGATCAGGATCATCACTACTACGAACCGCATCGGCAGTATCATAGGTTGTCGGTGTCGCACACCGGGGACGAGTTCAGTTCCGACGAGGACGAAGCGTTCGTGGAACTGTTGGAGAAGGCGAACCATATCGCGGAAGCCCGGCTGGCAGCACGGCGGCAGGCCCGAGCCGAAGCCCGCGAGATTCGGATGCGCGAGCTCGAGCGCCAGCAGAAGGAACTGGAGCAGAATGCGGACCGGGTGTTCGACCTGCAGCAGCAGTCCGCCAGCCTCGGCACGTCGGTCGACACGTCGCTCGGTGCGGCGCGCACCCCCGGCAGCCGGCTCACCGTGAACAGCAGCACCGTCGGTGGCGGCATCCGGGGCAGCTCGCTGTCGTCCCGGCGGAGCAGCGAAGACTCGCTCGAGGAGGAGGGCCGAAGTCTGCGGGATCTGCGGCATGAGCTCAAGGACGTCGAGGAGCGCTTCCGGAAGGCGATGGTCGCGAACGCCCAGCTGGACAACGAGCGGGCCTCCCAAAGCTACCAGATCCAGCTGCTGAAGGACAAGCTGGAGGAGATGGAGGAGTCCCATGCCCAGTTGCAGCGCGAGTTTAAGGAAAAGTGTCGCGACCATGACGCGTTGCGGCGGGCCAACGATAAGCTTGGGGACGAGCTGAAGATGGTGCAGGGTCAGCTGGCGGAGCGGGACGCGCTGATTGAGGAGCAGGGACTGGTGATTGTGACGGTGGAGAACGAGGACGGAAGCGATGCGAGGCGCGCGCTAGTCACCACGGAGAACGCCCAGCTGCTGAAGACGGTGCAGGGGTCGTTGGATGTAAGGCTCAAAAAGTTCGCCGAGGAAAAGCAGGAACTGCAAACGGAGGTGCAGCAGCTCCAGCAACAGCTGAAGGACATCAAGACCAAGGGCCGCAAATACAGCTCGGTAAACGGCGCCCTGGACGATGACGACTACGAGGACGCACAACGAGAAGCCAACAAACTCATCACCGACTACAAATACAAGCTGCAAAAGGCGGAGCAGGAGATCGCGAACCTGCAGGCCAGCCTGGCCCGGTCCGAGTCCCAGGTCATCCGGTACAAGAGCACGGCCGAGGCGGCGGAAAAGGCCGAAAGTGACCTCAAGATCGAGCGGAGAAAGCTGCAGCGGGAGAACCGCGAAGCGATGGACCGCCTCGAGGAGCTGGAGACGTGCAACAACCATCTGCTGAAGCGGCTGGACAAGCTGAAGAACGCCAAAAGCGCCCTGCTCAAGGACCTCTGA
- Protein Sequence
- MDSPGAVGRRRGNSRINAEDQALDQIAKEVLNQFWRRQNKTKITMSSDIKLSISEDERHLYHHHHHHHHLGGTNGVVNGEVLEFVMGSQYAKDPEQSGSVGEEEDRDGEFYSFEHSEDLERLGLGLTEELKIRESNERLDYNRNDLSGKQQQLLNGDSSTPTKGSDRRLSAGSSLATSANDEVDRSYGEDGGYEADQDHHYYEPHRQYHRLSVSHTGDEFSSDEDEAFVELLEKANHIAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDLQQQSASLGTSVDTSLGAARTPGSRLTVNSSTVGGGIRGSSLSSRRSSEDSLEEEGRSLRDLRHELKDVEERFRKAMVANAQLDNERASQSYQIQLLKDKLEEMEESHAQLQREFKEKCRDHDALRRANDKLGDELKMVQGQLAERDALIEEQGLVIVTVENEDGSDARRALVTTENAQLLKTVQGSLDVRLKKFAEEKQELQTEVQQLQQQLKDIKTKGRKYSSVNGALDDDDYEDAQREANKLITDYKYKLQKAEQEIANLQASLARSESQVIRYKSTAEAAEKAESDLKIERRKLQRENREAMDRLEELETCNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400566;
- 90% Identity
- iTF_00400566;
- 80% Identity
- -