Cpip000909.6
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- lrrfip2
- Assembly
- GCA_016801865.2
- Location
- NC:24823562-24847069[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-109 5.3e-106 354.8 33.2 1 299 192 492 192 493 0.89 2 2 0.41 1.8e+03 -1.5 2.8 209 244 511 545 495 566 0.61
Sequence Information
- Coding Sequence
- ATGAGTAGTGACATCAAGCTGAGTATTAGTGAGGACGAGCGACATTTGtaccaccatcaccaccatcTTGGCGGTACGAACGGTGTTGTCAACGGTGAAGTGCTCGAGTTTGTGATGGGTTCCCAGTACGCCAAGGATCCGGAGCAATCCGGTAGTGTCGGCGAGGAAGAGGATCGCGACGGGGAGTTTTACAGCTTCGAGCACAGTGAAGATCTGGAACGGCTCGGGCTGGGGCTGACGGAAGAGTTGAAGATCCGGGAGTCGAACGAACGGCTGGACTATAATCGGAACGATTTGAGCgggaagcagcagcagctggtcAATGGGGACAGTTCGACGCCCACGAAGGGAAGTGACCGGCGGCTGTCGGCTGGGAGTAGTCTGGCGACGTCGGCGAACGATGAGGTGGATCGGAGTTACGGAGAGGATGGGGGGTACGAGGCGGATCAGGATCATCACTATTACGAGCCGCATCGGCAGTATCATAGGTTGTCGGTGTCGCACACCGGGGACGAGTTCAGTTCCGACGAGGACGAAGCGTTCGTGGAATTGTTGGAGAAGGCGAACCATATCGCGGAAGCCCGGCTGGCAGCGCGCCGGCAAGCCCGAGCCGAAGCCCGCGAGATTCGGATGCGCGAGCTGGAGCGCCAGCAGAAGGAACTGGAGCAGAATGCGGACCGGGTGTTCGACCTGCAGCAGCAGTCCGCCAGCCTCGGCACGTCGGTGGACACGTCGCTCGGAGCGGCGCGCACCCCCGGCAGTCGGCTCACCGTGAACAGCAGCACCGTCGGTGGCGGCGGCATTCGGGGCAGCTCGCTGTCGTCCCGGCGGAGCAGCGAAGACTCGCTCGAGGAGGAGGGCCGAAGTCTGCGGGATCTGCGGCATGAGCTCAAGGACGTCGAGGAGCGCTTCCGGAAGGCGATGGTCGCGAACGCCCAGCTGGACAACGAGCGGGCCTCCCAAAGCTACCAGATCCAGCTGCTCAAGGACAAACTGGAGGAGATGGAGGAGTCCCATGCCCAGTTGCAGCGCGAGTTTAAGGAAAAGTGTCGCGACCATGACGCGTTGCGGCGGGCCAACGATAAGCTTGGGGACGAGCTGAAGATGGTGCAGGGTCAGCTGGCGGAGCGGGACGCGCTGATTGAGGAGCAGGGACTGGTGATTGTGACGGTGGAGAACGAGGACGGAAGCGATGCGAGGCGCGCGCTAGTCACCACGGAGAACGCCCAGCTGCTGAAGACGGTGCAGGGGTCGTTGGACGTAAGGCTCAAAAAGTTCGCCGAGGAAAAGCAGGAACTGCAGACGGAGGTCCAGCAGCTCCAGCAACAGCTGAAGGACATCAAGACCAAGGGCCGCAAGTACAGCTCGGTGAACGGCGCCCTGGACGATGACGACTACGAGGACGCACAACGAGAAGCCAACAAACTCATCACCGACTACAAATACAAGCTGCAAAAGGCGGAGCAGGAAATTGCCAACCTGCAGGCCAGCCTTGCGCGGTCCGAGTCCCAGGTCATCCGGTACAAGAGCACGGCCGAGGCGGCGGAAAAGGCCGAAAGTGACCTCAAGATCGAGCGGAGAAAGCTGCAGCGGGAGAACCGCGAAGCGATGGACCGCCTCGAGGAGCTGGAGACGTGCAACAACCATTTGCTGAAGCGGCTGGACAAGCTGAAGAACGCCAAAAGCGCCCTGCTCAAGGACCTCTGA
- Protein Sequence
- MSSDIKLSISEDERHLYHHHHHLGGTNGVVNGEVLEFVMGSQYAKDPEQSGSVGEEEDRDGEFYSFEHSEDLERLGLGLTEELKIRESNERLDYNRNDLSGKQQQLVNGDSSTPTKGSDRRLSAGSSLATSANDEVDRSYGEDGGYEADQDHHYYEPHRQYHRLSVSHTGDEFSSDEDEAFVELLEKANHIAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDLQQQSASLGTSVDTSLGAARTPGSRLTVNSSTVGGGGIRGSSLSSRRSSEDSLEEEGRSLRDLRHELKDVEERFRKAMVANAQLDNERASQSYQIQLLKDKLEEMEESHAQLQREFKEKCRDHDALRRANDKLGDELKMVQGQLAERDALIEEQGLVIVTVENEDGSDARRALVTTENAQLLKTVQGSLDVRLKKFAEEKQELQTEVQQLQQQLKDIKTKGRKYSSVNGALDDDDYEDAQREANKLITDYKYKLQKAEQEIANLQASLARSESQVIRYKSTAEAAEKAESDLKIERRKLQRENREAMDRLEELETCNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00401704;
- 90% Identity
- iTF_00401704;
- 80% Identity
- -