Cqui012033.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- bab2
- Assembly
- GCA_015732765.1
- Location
- NC:102470983-102617739[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.46 2.9e+02 1.0 0.0 14 26 506 518 499 519 0.86 2 5 4.7e-06 0.0029 17.0 0.2 3 39 561 605 559 609 0.75 3 5 8.7e-12 5.4e-09 35.4 0.1 2 39 621 658 620 661 0.94 4 5 1.1e-17 7e-15 54.2 0.0 3 45 677 720 675 720 0.97 5 5 6.2e-17 3.8e-14 51.8 0.0 1 43 727 770 727 772 0.96
Sequence Information
- Coding Sequence
- ATGGATGCCAAGCCTGCAACATCAACCATGGCATTCCCCTCGATGTCACCTTACTCCAAGGGAGGAGTAAGATCGTCTCATCAGTACTTTAGCCTGAGATGGAACAACTACCAGTCAAACATGACCTCAGTTTTTCACGAACTACTGGAAACACAATCGTTTGTTGATGTCACTCTTGCGTGTGAATACAATTCTTTGAAGGCTCATAAGGTCGTTCTATCAGCCTGCTctgcgtattttcaaaaaattctgcTCGATAATCCATGCAAACATCCTACAATCATCTTGCCAGCGGATATATGTTTCTCCGATTTACAATTCATCATAGAATTTGTGTATCGTGGCGAGATTGATGTTTCCGAATCCGAATTACAGAGTCTTCTTCGGACAGCTGAACAACTGAAAATCAAAGGTTTATGCGAAGTTAGCGAATCGCAATACGAACAGGAGTACTCTCCTTCGATTAAACGCTACAAGCCATATCGCTCAAGATCGCCAGAAAATCGTTTTCCACCCGTTCAGGGATCGCAGTCCAACACATGCACTAGAAGCAACAATTCTTCCTCCTCGCAAAGTAACACAAACCAAAGTGGACAAGACTCCAAAAGTGACCACAAATCATCGAGCAGAAGCCATACTATTAATTCAGAGTCTGCTTCAATCGACAATGGATCATCTGTAGTTGTACTAGAGTCACGCGATTTAACTCCGTCATCGGGCAAGGAAGGAAAAGGCAAAATGACGAGCCTCGGGATGGGAGTGGGCATAAACGGCTCCGTTATGGGTGTGTCAATGGGTTATCTGGATTTTGCTCCGGAACCCCCGGCACCGGCAGCGACCCCTGTAACAGAACACGTTGACATTAATTGTGCTCCCAGCCATGACACACGTGACTTGTCCAGTAAGTACTCCATTTCAAATAACGGCGACATCCGAGTGAAATTTGAAACACTTCGTTCGCTTGATCCACAAGATGCTATAACGTTGGATAATCAGGTATCCCATCAAGTACACCAAGTTCAAAATCAGCAGCAGTTGCAACATCAGCAGATTTTGCATCAACAACATTTactgcagcaacaacaacagcagcagcagcagcagcaacaacaacagcaagtaCACCGGCAAACTCCACAaccgcaacaacaacaagtgGAACACCGTTTATCACCCCATCAACCATCCCCGCAACATCCACCGCAACATCAGCAACATGTTCTACTGATCGATCAGCAGTCCCAACACTCTCAACACTCTCACAGTCCAGCATCGAATGCTTCCAGTTCGTCCAGCCAACTTAATCCGGAAAACCTTGTAACTATAGCTTCCAGTAACGACAACGGTGCTTCGATAGATAAATCGCGAATCACACTAAAACAGGAAATAATATCTGAAGTCGATCAGCAacatcaacagcagcaacagcaacaacaatcaCAGCACCAGCAGCAACAAATGGAAGTCGAACAGGATCAATCTTCGATGCACGGCATGGTGGTGACACCGGAAATTTCGGGAATGATGAGTCAGAGTCAAATGAGCGACATTTATCAGTCAGATGCCAGCGAAGATTCAAAGGTTGGAATATTGGATGGGTCGTCAGTGCAGTATACTAACCTGACGAGTCCTAACACGAGTGACCCTAAAACGCCAAGTGGACCCAAAACTTGGACTGCAGAAGATATGGAATCAGCTCTTGATGCATTACGAACCCATAACATGAGTCTAACCAAGtctaaaaaaactaaattaaaggCTTCCGCTACGTACGGTATTCCGTCGACAACCCTGTGGCAGAGAGCACATAGGCTCGGTATTGACACACCAAAGAAGGAAGGACCATCAAAAACGTGGAACGAAGAGTCACTGAACAGCGCTCTAGAGGCCTTGCGTACCGGAACAATCTCAGCAAACAAAGCATCGAAGGCGTTTGGGATTCCGTCTTCCACGTTGTATAAAATTGCAAGACGCGAGGGAATTCGACTGGCCGCACCGTTCAATGCGGCTCCCACCACCTGGTCTGCGGAAGATCTTGATCGTGCCTTGGAAGCAATTAGGGCTGGCCAAACATCTGTACAGAAGGCGAGCACGGAGTTTGGCATCCCGACGGGAACGCTGTACGGACGATGTAAACGAGAAGGAATTGAGTTGTCGCGATCGAACCCAACACCGTGGTCTGAAGATGCAATGATGGAAGCCTTAGAATCAGTAAAACAAGGACACATGTCGATAAACCAAGCTGCAATCCATTATAACTTACCGTACAGTTCACTGTACGGGCGGTTCAAGCGCGGCAAATACGATACACCAAATAGCGCCAATTCGTCACACTCGAATCACGGCGGCGCCGGTGTAGGTGGAGGCAGCAATGTAATCGGAGGCAATGTTGCGACTTCGGCAGCAACGATGGCCGGCGTTACCAGCAGTCCTCAGAtggaatttaaaattgaacCTCAACATAATGAGCATAGTCCAGAAAACACGCAACATTATAATCCTGCGCTAACAACATCACTAACATCGTCGACCGTGCCGCCATTGACTCAAGCCGCCCACCATATCGTACAGTCACCGTCGCCAGTCAATATTCACATCATAAACAGTAACAACCATCACCAGTTCCAACAAAATTCTCCTCACCAGATGGGAACTCCAAcgcatcagcagcagcaccaccaccaccaacaacaacaacagcagcagcaacttatTCAGCATCACATAATTCCACAGCAGCATATTATCTACCAGCAACCATTGCAGCAGTTGCAGCAACAACCCCAGTACCACCCGATGTATCACATAatcaaacaggaaaatgacaGAAGTTGA
- Protein Sequence
- MDAKPATSTMAFPSMSPYSKGGVRSSHQYFSLRWNNYQSNMTSVFHELLETQSFVDVTLACEYNSLKAHKVVLSACSAYFQKILLDNPCKHPTIILPADICFSDLQFIIEFVYRGEIDVSESELQSLLRTAEQLKIKGLCEVSESQYEQEYSPSIKRYKPYRSRSPENRFPPVQGSQSNTCTRSNNSSSSQSNTNQSGQDSKSDHKSSSRSHTINSESASIDNGSSVVVLESRDLTPSSGKEGKGKMTSLGMGVGINGSVMGVSMGYLDFAPEPPAPAATPVTEHVDINCAPSHDTRDLSSKYSISNNGDIRVKFETLRSLDPQDAITLDNQVSHQVHQVQNQQQLQHQQILHQQHLLQQQQQQQQQQQQQQQVHRQTPQPQQQQVEHRLSPHQPSPQHPPQHQQHVLLIDQQSQHSQHSHSPASNASSSSSQLNPENLVTIASSNDNGASIDKSRITLKQEIISEVDQQHQQQQQQQQSQHQQQQMEVEQDQSSMHGMVVTPEISGMMSQSQMSDIYQSDASEDSKVGILDGSSVQYTNLTSPNTSDPKTPSGPKTWTAEDMESALDALRTHNMSLTKSKKTKLKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEESLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPNSANSSHSNHGGAGVGGGSNVIGGNVATSAATMAGVTSSPQMEFKIEPQHNEHSPENTQHYNPALTTSLTSSTVPPLTQAAHHIVQSPSPVNIHIINSNNHHQFQQNSPHQMGTPTHQQQHHHHQQQQQQQQLIQHHIIPQQHIIYQQPLQQLQQQPQYHPMYHIIKQENDRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00948660;
- 90% Identity
- iTF_00400481;
- 80% Identity
- iTF_00401857;