Basic Information

Insect: Culex pipiens
Gene Symbol: -
Assembly: GCA_016801865.2
Location: NW:253223-339120[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.69 4.4e+02 1.2 0.0 14 26 402 414 395 415 0.86

2 5 7.1e-06 0.0045 17.2 0.2 3 39 457 501 455 505 0.75

3 5 1.3e-11 8.2e-09 35.6 0.1 2 39 517 554 516 557 0.94

4 5 1.7e-17 1.1e-14 54.4 0.0 3 45 573 616 571 616 0.97

5 5 9.2e-17 5.8e-14 52.0 0.0 1 43 623 666 623 668 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.69	4.4e+02	1.2	0.0	14	26	402	414	395	415	0.86
2	5	7.1e-06	0.0045	17.2	0.2	3	39	457	501	455	505	0.75
3	5	1.3e-11	8.2e-09	35.6	0.1	2	39	517	554	516	557	0.94
4	5	1.7e-17	1.1e-14	54.4	0.0	3	45	573	616	571	616	0.97
5	5	9.2e-17	5.8e-14	52.0	0.0	1	43	623	666	623	668	0.96

Sequence Information

Coding Sequence: atgtttttttttcattgtgtgagagctagcaaaaaaaaaggagaaaaaaaaactgaaaaatgtgtgaGAGAGGTTGAAACGGCTCAGTTGTGTAGGATTCAGCTACATACGGACGGAGAAGAACGGCTGAGTCTTCTTCGGACAGCTGAACAACTGAAAATCAAAGGTTTATGCGAAGTTAGCGAATCGCAATACGAACAGGAGTACTCTCCTTCGATTAAACGCTACAAGCCATATCGCTCAAGATCGCCAGAAAATCGTTTTCCACCCGTTCAGGGATCGCAGTCCAACACATGCACTAGAAGCAACAATTCTTCCTCCTCGCAAAGTAACACAAACCAAAGTGGACAAGACTCCAAAAGTGACCACAAATCATCGAGCAGAAGCCATACTATTAATTCAGAGTCTGCTTCAATCGACAATGGATCATCTGTAGTTGTACTAGAGTCACGCGATTTAACTCCGTCATCGGGCAAGGAAGGAAAAGGCAAAATGACGAGCCTCGGGATGGGAGTGGGCATAAACGGCTCCGTTATGGGTGTGTCAATGGGTTATCTGGATTTTGCTCCGGAACCCCCGGCACCGGCAGCGACCCCTGTAACAGAACACGTTGACATTAATTGTGCTCCCAGCCATGACACACGTGACTTGTCCAGTAAGTACTCCATTTCAAATAACGGCGACATCCGAGTGAAATTTGAAACACTTCGTTCGCTTGATCCACAAGATGCTATAACGTTGGATAATCAGGTATCCCATCAAGTACACCAAGTTCAAAATCAGCAGCAGTTGCAACATCAGCAGATTTTGCATCAACAACATTtactgcagcaacaacaacagcagcagcagcagcagcaacaacaacagcaagtaCACCGGCAAACTCCACAaccgcaacaacaacaagtgGAACACCGTTTATCACCCCATCAACCATCCCCGCAACATCCACCGCAACATCAGCAACATGTTCTACTGATCGATCAGCAGTCCCAACACTCTCAACACTCTCACAGTCCAGCATCGAATGCTTCCAGTTCGTCCAGCCAACTTAATCCGGAAAACCTTGAAATAATATCTGAAGTCGATCAGCAacatcaacagcagcaacagcaacaacaatcacAGCACCAGCAGCAACAAATGGAAGTCGAACAGGATCAATCTTCGATGCACGGCATGGTGGTGACACCGGAAATTTCGGGAATGATGAGTCAGAGTCAAATGAGCGACATTTATCAGTCAGATGCCAGCGAAGATTCAAAGGTTGGAATATTGGATGGGTCGTCAGTGCAGTATACTAACCTGACGAGTCCTAACACGAGTGACCCTAAAACGCCAAGTGGACCCAAAACTTGGACTGCAGAAGATATGGAATCAGCTCTTGATGCATTACGAACCCATAACATGAGTCTAACCAAGtctaaaaaaactaaattaaaggCTTCCGCTACGTACGGTATTCCGTCGACAACCCTGTGGCAGAGAGCACATAGGCTCGGTATTGACACACCAAAGAAGGAAGGACCATCAAAAACGTGGAACGAAGAGTCACTGAACAGCGCTCTAGAGGCCTTGCGTACCGGAACAATCTCAGCAAACAAAGCATCGAAGGCGTTTGGGATTCCGTCTTCCACGTTGTATAAAATTGCAAGACGCGAGGGAATTCGACTGGCCGCACCGTTCAATGCGGCTCCCACCACCTGGTCTGCGGAAGATCTTGATCGTGCCTTGGAAGCAATTAGGGCTGGCCAAACATCTGTACAGAAGGCGAGCACGGAGTTTGGCATCCCGACGGGAACGCTGTACGGACGATGTAAACGAGAAGGAATTGAGTTGTCGCGATCGAACCCAACACCGTGGTCTGAAGATGCAATGATGGAAGCCTTAGAATCAGTAAAACAAGGACACATGTCGATAAACCAAGCTGCAATCCATTATAACTTACCGTACAGTTCACTGTACGGGCGGTTCAAGCGCGGCAAATACGATACACCAAATAGCGCCAATTCGTCACACTCGAATCACGGCGGCGCCGGTGTAGGTGGAGGCAGCAATGTAATCGGAGGCAATGTTGCGACTTCGGCAGCAACGATGGCCGGCGTTACCAGCAGTCCTCAGatggaatttaaaattgaacCTCAACATAATGAGCATAGTCCAGAAAACACGCAACATTATAATCCTGCGCTAACAACATCACTAACATCGTCGACCGTGCCGCCATTGACTCAAGCCGCCCACCATATCGTACAGTCACCGTCGCCAGTCAATATTCACATCATAAACAGTAACAACCATCACCAGTTCCAACAAAATTCTCCTCACCAGATGGGAACGCCAAcgcatcagcagcagcaccaccaccaccaacaacaacaacagcagcagcaacttatTCAGCATCACATAATTCCACAGCAGCATATTATCTACCAGCAACCATTGCAGCAGTTGCAGCAACAACCCCAGTACCACCCGATGTATCACATAatcaaacaggaaaatgacaGAAGTTGA
Protein Sequence: MFFFHCVRASKKKGEKKTEKCVREVETAQLCRIQLHTDGEERLSLLRTAEQLKIKGLCEVSESQYEQEYSPSIKRYKPYRSRSPENRFPPVQGSQSNTCTRSNNSSSSQSNTNQSGQDSKSDHKSSSRSHTINSESASIDNGSSVVVLESRDLTPSSGKEGKGKMTSLGMGVGINGSVMGVSMGYLDFAPEPPAPAATPVTEHVDINCAPSHDTRDLSSKYSISNNGDIRVKFETLRSLDPQDAITLDNQVSHQVHQVQNQQQLQHQQILHQQHLLQQQQQQQQQQQQQQQVHRQTPQPQQQQVEHRLSPHQPSPQHPPQHQQHVLLIDQQSQHSQHSHSPASNASSSSSQLNPENLEIISEVDQQHQQQQQQQQSQHQQQQMEVEQDQSSMHGMVVTPEISGMMSQSQMSDIYQSDASEDSKVGILDGSSVQYTNLTSPNTSDPKTPSGPKTWTAEDMESALDALRTHNMSLTKSKKTKLKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEESLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPNSANSSHSNHGGAGVGGGSNVIGGNVATSAATMAGVTSSPQMEFKIEPQHNEHSPENTQHYNPALTTSLTSSTVPPLTQAAHHIVQSPSPVNIHIINSNNHHQFQQNSPHQMGTPTHQQQHHHHQQQQQQQQLIQHHIIPQQHIIYQQPLQQLQQQPQYHPMYHIIKQENDRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00948660;
90% Identity: iTF_00401619; iTF_00401857;
80% Identity: -