Cpip003517.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- grn
- Assembly
- GCA_016801865.2
- Location
- NC:104854617-104890187[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.6e-19 8.9e-16 57.7 4.3 1 35 367 400 367 401 0.98 2 2 8.1e-19 7.5e-16 58.0 4.8 1 35 426 459 426 460 0.97
Sequence Information
- Coding Sequence
- ATGATGGATGCATCGGCGGTAGAGGCTCGCGGCTGGTACGACAACCAGCGGCTGGCCGCCGAGAGTTCGCTGGGCCCGTCGGCAGCTGCAGCGGCGGCTGCGGCCGCTTCGCTCGGGCAGCAATCGGCGGCGGCGGGAGTTGGCGATGCGTCCGACATGAATGCGTTCTATCGGTTCGAGAACGGAGCGGCGGCCGCAGCCCACCGACGGTACTACCCGACCGGATACGGAACGCACGCCTCCCGGATGTCCCCGCACATGACGCCCCAGGTGTGCCGGCCGCACTTTCCCAGCCCGCTGTCCTGGTTCAACGAGTCGACGAAACCGTTCGCCGCGAGCGGCAGCTGGAGCAGTCCCTTCAGCTGTCCCCAGGATCCCCAGGAAAGCAAGCAGAACCAGCAGATGCAGGCCAGCAGTCAGGCCGCGGCCGTCGGCCAGCATCTGTTCTCGTTCCCGCCGACGCCCCCCAAGGACTCGACGCCGGACTCGGTGCAGACGACCCCGACCGAGTACCAAACCACCCTGAACAACTTCATGCACCTGTCCTCGAGCCAAGCGACCTCCGCCGGCAGTCAGCAAACGCACGGTGCGTCCGgctccagcaacaacaacaacaacaactccagCCTCTCGTCCGAGCAGTGCGGCATCGACGTCAAGCCCTGCCTCACcggcagcggcggcggcggctccATGAACGACCGGAGCGTCGTCGGACAGGACGTCGAGCAGAACCAGCCAAAGCATCGGGAAGGTACGGGCAGTAGCAATAACGTCAACAACAGCAGTTCCGCGTCCAGTGCCAACAGTCATGGGGCCTACCAGAACTCTGCGGCGGCAGCGGCGGCGGCCGCCAACTCGTTCAACATGTTTGACGGAACGGGTCACGGCGGCGGCAGCGGGTACGATCACACCGGCTACGGGTTCCACCAGGCCACCGGACATGGGATCGGTGGCGGCGGGGGTGGTTCCTCCGGTGGGGGATCGTACCAGCAGAGTTCGAGGCCGCCCGGTGGCGGCGGTGGCAGTGGCCTCATGAACAGCTCCCACATGAAGGCCCAGCGGGCCAAAGCGAAATCCAGTGCCGAGGGCCGCGAGTGCGTCAACTGCGGCGCGACGTCGACGCCGCTGTGGCGGCGGGACGCCACCGGCCACTACCTGTGCAATGCCTGCGGGCTGTACTACAAGATGAACGGCCAGAACCGGCCGCTGATCAAGCCCAAGCGGAAACCAGTTACCTCCCAGCAGAGTGCGGCCCGGCGGGCGGGAACCTCGTGTGCAAACTGCAAAACCACGACCACCTCGCTGTGGAGGAGGAACCAGAGCGGCGAACCGGTCTGTAACGCCTGCGGACTGTACTACAAGTTGCATAACGTGGACCGACCGCTGACGATGAAGAAGGAGGGCATCCAGACGCGGAACCGCAAGCTGACGGCCAAATCGAAGAAGCGAAAATCCACGCCCGGGTACAGCTTCTCCTTCGGCGATCTCATGAACCCGCTGGACCACAACAAGTCCTTCCCGGGGGCGTTCCCGACGACGATGGgtCAACACGCGCACTTGTCCGGTGGATTGCACCCGGCCCACTCGCACATGCACAGCGGTTGGTACACGACCGGACTCGGATCGCTGGGATCTGGGAGCAGCCTGCAGAACGGATTTAGCAGTGGGGCACCGCTGGGAACCGGCGCGGTGGCGCACCCCCAGTCCTACCATCTGGGGTTGAATTCGATGAGCTGGCGCTCGGAATACACGTGA
- Protein Sequence
- MMDASAVEARGWYDNQRLAAESSLGPSAAAAAAAAASLGQQSAAAGVGDASDMNAFYRFENGAAAAAHRRYYPTGYGTHASRMSPHMTPQVCRPHFPSPLSWFNESTKPFAASGSWSSPFSCPQDPQESKQNQQMQASSQAAAVGQHLFSFPPTPPKDSTPDSVQTTPTEYQTTLNNFMHLSSSQATSAGSQQTHGASGSSNNNNNNSSLSSEQCGIDVKPCLTGSGGGGSMNDRSVVGQDVEQNQPKHREGTGSSNNVNNSSSASSANSHGAYQNSAAAAAAAANSFNMFDGTGHGGGSGYDHTGYGFHQATGHGIGGGGGGSSGGGSYQQSSRPPGGGGGSGLMNSSHMKAQRAKAKSSAEGRECVNCGATSTPLWRRDATGHYLCNACGLYYKMNGQNRPLIKPKRKPVTSQQSAARRAGTSCANCKTTTTSLWRRNQSGEPVCNACGLYYKLHNVDRPLTMKKEGIQTRNRKLTAKSKKRKSTPGYSFSFGDLMNPLDHNKSFPGAFPTTMGQHAHLSGGLHPAHSHMHSGWYTTGLGSLGSGSSLQNGFSSGAPLGTGAVAHPQSYHLGLNSMSWRSEYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01525596;
- 90% Identity
- iTF_00402435;
- 80% Identity
- -