Basic Information

Insect: Culex pipiens
Gene Symbol: -
Assembly: GCA_016801865.2
Location: NC:137714413-137718292[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.003 0.091 13.8 0.3 2 23 200 222 199 222 0.94

2 16 0.00021 0.0066 17.4 4.0 1 23 225 247 225 247 0.97

3 16 0.005 0.15 13.1 0.4 1 23 263 286 263 286 0.91

4 16 0.0013 0.041 14.9 0.4 1 23 296 318 296 318 0.98

5 16 5.4 1.7e+02 3.5 0.5 6 20 326 340 324 342 0.91

6 16 0.017 0.52 11.4 0.3 2 23 352 374 352 374 0.93

7 16 0.18 5.6 8.1 0.0 2 21 379 398 378 399 0.94

8 16 0.41 13 7.0 0.2 2 23 416 438 416 438 0.95

9 16 0.013 0.41 11.7 0.7 2 23 444 465 443 465 0.96

10 16 6.8e-05 0.0021 18.9 0.1 1 23 470 492 470 492 0.99

11 16 1.5e-05 0.00046 21.0 2.6 2 23 497 518 496 518 0.97

12 16 6.4e-05 0.002 19.0 0.1 1 23 524 546 524 546 0.97

13 16 0.0002 0.0062 17.4 1.9 1 23 552 575 552 575 0.96

14 16 0.00081 0.025 15.6 2.5 1 23 581 603 581 603 0.98

15 16 0.025 0.78 10.8 0.1 2 23 610 632 609 632 0.95

16 16 0.0025 0.076 14.0 0.3 1 23 638 660 638 660 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.003	0.091	13.8	0.3	2	23	200	222	199	222	0.94
2	16	0.00021	0.0066	17.4	4.0	1	23	225	247	225	247	0.97
3	16	0.005	0.15	13.1	0.4	1	23	263	286	263	286	0.91
4	16	0.0013	0.041	14.9	0.4	1	23	296	318	296	318	0.98
5	16	5.4	1.7e+02	3.5	0.5	6	20	326	340	324	342	0.91
6	16	0.017	0.52	11.4	0.3	2	23	352	374	352	374	0.93
7	16	0.18	5.6	8.1	0.0	2	21	379	398	378	399	0.94
8	16	0.41	13	7.0	0.2	2	23	416	438	416	438	0.95
9	16	0.013	0.41	11.7	0.7	2	23	444	465	443	465	0.96
10	16	6.8e-05	0.0021	18.9	0.1	1	23	470	492	470	492	0.99
11	16	1.5e-05	0.00046	21.0	2.6	2	23	497	518	496	518	0.97
12	16	6.4e-05	0.002	19.0	0.1	1	23	524	546	524	546	0.97
13	16	0.0002	0.0062	17.4	1.9	1	23	552	575	552	575	0.96
14	16	0.00081	0.025	15.6	2.5	1	23	581	603	581	603	0.98
15	16	0.025	0.78	10.8	0.1	2	23	610	632	609	632	0.95
16	16	0.0025	0.076	14.0	0.3	1	23	638	660	638	660	0.96

Sequence Information

Coding Sequence: ATGCAGTTCGACCTGGTCCGGGACACCACCAAGCTATGTCGGGTGTGCTTGATGGATAGCGATGAACATCGCACCGACATGTACGAAGTATCCGACCAGTTTAGCTTGCACGAAATGCTGAAAGCCATCTGCGCCACCGTATTTGATAAATCCGATGCTGAGTATCCACCCGGGATGCCTACGACGGTTTGTGCCGACTGCCGGAATGCTATTCTCGCAGCTTTCAAGCTGCACCAGACGTGCGTCGATAGTGAGCGTCGGCTGATGGAGCTGCTGGCGCTAAAGTGGGAGCTTCGAGATCTGAAGAGTGAGGAGGAATCCGGAGATCCACTAAAGTCCGCCGGTGAAGAAGCGCCGCAGGAAGAAATGTTAAGCGTTGAAGTGGAAGGTCATGTTAAGACCGAACGAGAAACGCATCTTCTCGAGGAGGAGCAACCAAAAGACGAGATGGAAGATTCACTCTTAGATAGTGAGCATGGAGATACGATAAAGGTTGAAGAATTAGATTTGATGGACGTGGACGACAACGAAAACGGTGATATTTCTGAATCTGGTGAGACCATGGAACCTTCCGTCGAAGAAGACACGAGCAATATCACCTGTAACATTTGCTCGACGTCGTTTGGTGAAGCTGTCATGCTGAGAAAACACATGACCCTAAAACATCAGTTGCACATGTGCGAGTTTTGTCCGAAATCTTTCAGAATCCGCGCAAGTTTTACTCGTCATCAGCGGCGACACTTGAAGAAGCATCCGGAGAGAGGCTCGAGCGGATCGAGGAAGGTGTATTCTTGTCAATATTGCGAGGAAACGTTCAAAGTGGGCATGCAACTTAAGAGACACAAAGCAGCTGTCCATCGAAATATAAAAGATCCGGATCAACCTTTCACGTGCAGATTATGCGCGGAATCGTACGCAACGGCATCGGAGCTGTTGACCCACAAAAAAACGCATGAAAATCCAGTTAACTGTTCATGTGGACGTAGATTTAAAAATGACATGAGATTACAAACGCATACCGCGTCCGGAACGTGCTCAGGAGATAACGATAGAAGGTGTAACATATGTAATAAAGTCTACAAATCGGTCGACGTCATGCTCAGGCATCGCAACGCGGTGCATTCCGAGCCCGTCGTATGTCCCGAGTGTGGCCAGACGATGGCTAACCTTGCCAGCATGCGAATGCATTTGCGGATCGGATTCTGCTCAGCGCAACCTCCGACAAAATCTGTGATAGCTGCCAGAACCTGTAAGATTTGTGGCGAAGAACAGAAAAACCGTTACGCTGTTAAAGGTCACATGATACGAGCACATCCGGACCGTATGCTTCGCTGTGATATGTGCAGTATGGAATTTAGAACTCAAAGATATCTTGATTTGCACGTACAATACCACAAATCCAAGACGTTCCAATGTAAAATTTGTGACGAAATCGTGCCCTCAAAAGATGCTCTGGTGAAGCACCGACGAATCCACAGAGACCCCATCACGTGCTCagtttgtgacaaaaagtttgcATCCAAACACACTCTTACTACCCACATGGAGCGACACATAGGCCTCAAACCGTTCGCCTGTGACGTTTGTCCGATGCGGTTTATAACGAAAATTGAGTTTCAAGCTCACATGCTTACGCACACCAAGCAACAGGACCATGTTTGTGATCTTTGCGGGTCTcggttcacaaaaaaatattcgttgAAGGCACATGTCAAGCGTGTTCACGAGGGTATTCGTCCCTTTCCGTGCTCACAGTGCAGTTTAAAGTTTTCCACCGCGCATCGACTGCAGATCCACATGTACACCCATACCGGGGAAAAACCGAACAAGTGTGAACTTTGCCCGCAGGCGTACGCCCAGACCAACGATCTGGTCAAGCACGTGGCCCGCGCCCACGGCGATGGCAATCCGTACCTTTGCGACCTGTGCGACGAGGGGTTCAAGCTTATGACGGATCTGCGCCAGCACTATCGGGTGCACGTGCAATCGACGGAAGGTGGCGCCGACCAGATGGAGGAGGTGCGCTTCACCAGTGTGACGATTCTGAAGAGGGCGTTCGCTAAAGCGAGACAGCGGGAGGAGGCCGAAAGAGGCTCGTAG
Protein Sequence: MQFDLVRDTTKLCRVCLMDSDEHRTDMYEVSDQFSLHEMLKAICATVFDKSDAEYPPGMPTTVCADCRNAILAAFKLHQTCVDSERRLMELLALKWELRDLKSEEESGDPLKSAGEEAPQEEMLSVEVEGHVKTERETHLLEEEQPKDEMEDSLLDSEHGDTIKVEELDLMDVDDNENGDISESGETMEPSVEEDTSNITCNICSTSFGEAVMLRKHMTLKHQLHMCEFCPKSFRIRASFTRHQRRHLKKHPERGSSGSRKVYSCQYCEETFKVGMQLKRHKAAVHRNIKDPDQPFTCRLCAESYATASELLTHKKTHENPVNCSCGRRFKNDMRLQTHTASGTCSGDNDRRCNICNKVYKSVDVMLRHRNAVHSEPVVCPECGQTMANLASMRMHLRIGFCSAQPPTKSVIAARTCKICGEEQKNRYAVKGHMIRAHPDRMLRCDMCSMEFRTQRYLDLHVQYHKSKTFQCKICDEIVPSKDALVKHRRIHRDPITCSVCDKKFASKHTLTTHMERHIGLKPFACDVCPMRFITKIEFQAHMLTHTKQQDHVCDLCGSRFTKKYSLKAHVKRVHEGIRPFPCSQCSLKFSTAHRLQIHMYTHTGEKPNKCELCPQAYAQTNDLVKHVARAHGDGNPYLCDLCDEGFKLMTDLRQHYRVHVQSTEGGADQMEEVRFTSVTILKRAFAKARQREEAERGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00400823;
90% Identity: iTF_00401929;
80% Identity: -