Basic Information

Gene Symbol
-
Assembly
GCA_963971235.1
Location
OZ020240.1:15103358-15107626[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 4.6 6.8e+02 2.1 4.8 2 23 235 257 234 257 0.96
2 21 0.032 4.8 8.9 2.7 1 23 325 347 325 347 0.97
3 21 0.005 0.73 11.4 0.8 1 23 396 418 396 418 0.98
4 21 0.0015 0.21 13.1 0.3 3 20 473 490 472 492 0.95
5 21 0.071 10 7.8 1.6 1 23 504 527 504 527 0.97
6 21 0.019 2.8 9.6 3.7 1 23 532 554 532 554 0.98
7 21 0.13 20 6.9 0.1 3 23 597 618 595 618 0.84
8 21 5.9e-05 0.0086 17.5 0.1 1 23 624 646 624 646 0.97
9 21 3.4e-06 0.0005 21.4 3.0 2 23 682 704 681 704 0.96
10 21 0.0073 1.1 10.9 1.4 1 23 710 733 710 733 0.97
11 21 4.9e-05 0.0073 17.7 0.1 2 23 741 763 740 763 0.95
12 21 0.0026 0.39 12.3 0.6 3 23 773 793 771 793 0.92
13 21 0.027 4 9.1 0.1 2 20 862 880 861 880 0.95
14 21 0.017 2.5 9.8 0.1 2 23 900 921 899 921 0.96
15 21 1.7e-06 0.00026 22.3 1.0 2 23 942 963 942 963 0.97
16 21 3e-06 0.00045 21.6 0.5 1 20 988 1007 988 1009 0.94
17 21 0.048 7.1 8.4 0.8 2 23 1063 1085 1062 1085 0.94
18 21 0.0031 0.47 12.1 1.0 2 23 1105 1127 1104 1127 0.93
19 21 0.055 8.2 8.1 0.3 1 23 1134 1158 1134 1158 0.97
20 21 0.086 13 7.6 0.0 1 23 1163 1186 1163 1186 0.95
21 21 0.005 0.74 11.4 0.2 2 23 1221 1243 1221 1243 0.96

Sequence Information

Coding Sequence
ATGGACGAAACAGTGGAAGTACGGAATGTCGAGAATCTTTGTAGATTATGTCTTTCCACCGACGAGCCGCGATCTTCGATATTCGGCGATCGCGCCACGACGACGCTGTCGTTGGCCACgaaaattcacaattttttgtCCATCGAGATCTTAGCGAGCGATAAATTGTCGACGTCGATATGCGCCGAGTGCCTGATGAGGGTTAACAAATGGCAATCATACAAGGAATCCTGTCTACGCTCTCAGGAAAAATTGCAACGATGCCTCGCGGAACGTGCGGAAACCATACCTCACATCCCGAACATCAAGGCGGAGCCAATGGATTTCGATGAACCGCCCGGTTCGTTGGAAACAGTGCCGCTGACATCCGACGAGGAATGGGAGAGTACAATTGACGAGCGGAACGAATCCGCTGAGATAACAGTCTGCACGCGTTCCGAGAAGCCAATATCTCCGCGGGATAGTGTGACTATAAAGCGCGAGGCGATTGAGGACGAGGAGAATCAGAACACGGAAATTGAATCGATATGCAGCACGGAGCTTCTCCTGAATCCAATGGCAGTGGGGACCACCAAAGAAGATCGCGTAATGGAAGCGGACTCGACGCAGAAGCTCTACAATCCGAAGAGTCTACGcggcaagaagaagaagattcgTCGTGGTCCAGCGACGCATTATCGTGgggcaaaaaaattcaaacagcGTTGCAGCTTCTGCCAGATATATCTTCACTCGAAGCAGACGTACAAAAAGCACATGGAACGTTTTCACAGCGGAAAGAAGCCGGAAGTGAAGTCAAAGGTCGCGAAGAAGTTCAGCGGCGTTGGAGGATCGGAATCAAAGAAATTCGTTCACGAGGCCGTCGAGGAGATCGAGGAGATGATTGAGGACGTTGAGGACGAATTGATAAGTTTGGAAAAAGATGCGCCATTAACGCCGGTGCAGCAAAACATAATAAGCCAATTGAAGACCTTCTCGTGTTACTCTTGTCAGCAGACCTTCAACGATCGTCGAAGTACGCTGAATCATATACGGCAGCATATGCCCGATCTGAGGCCCTATACTTGCATAGCATGTCTCACGGAGTTCGCCGATCGTTCGATCTATAAGCTTCACTGCGGCGCTTCGTTTCAATGCGCGATGAAAATAGCTCTCGTAGTGCCGGAAAACGGCACCGAGAAGTATTTCACATGCAACATGTGTCTCCGTCCGTTGTCCAATCGAAAGGAACTGTTAAGCCACTTGTCGAGACACTCTGACAAGCAGTACGAGCAATTGGTTGGCGGACCATTCCGTTCGCCGCCAAAGCTTAAGCCAATGGCGTCGCTTCCGGCCGTTTCGAGGAGAAATCGCGAAACGTCCGCGAATCGAATTCCAGTTCCTTACATGAACGGTGATCCTTCGCGCAATAATCTCTGCGATTATTGCGGTATGATATACAAACACAAGCCAAATCTTATAAAACATCGTGAATTCTGCAAAAAATTATCGCCTGACGAGAGAATATGCTATCGTTGCGTTCACTGCGGCGCAACGTTTATGGCATTCAACAAATTTCAAGGGCATCTAAAAACGGTACACAAGAAAAAAGATTACGTGTGTTCGCACTGTTCTCTCGCATTCAAAGAATCGAATGAGTATCTCGATCATCATCGACAGCATCGCGTCAGAGACAATCGTCTCGCGAGCGTTTCCGGTGTCTCGGGTCGGACGCGAAAGATCAAAACGTGGGAAAGCACCGCGGAAGAATctaaaaatgattctttcaaaTCGTTGAATCGTTGGAGTTGCGCCCTCTGTCCGGGAAGTACATTTCCAACGAAGGCGCAACTCACGGAACATCGAAAGGTTCACCTAAAGTTAAAGATCTATTCGTGTTCTGTTTGCCGTCGTATGTTCGGACGCGCATCGGCTCTTGAGTCTCATATGGCGGAGCACGACGCGTCCGAAAGTCCGGCAAACACGTCGCAACCAATAGCTGTTAAGTTCGATCCAAACGTCAGCAAAGACTCGATAAACTCCGATCCCGGACTCAGCAGTAGTGAGTGTCACACTTGCGGTAAGGTGTTCGCGAGTTATCACAATCTTCGCCGTCACGTGCGCAACGTTCACGAGGCACCGGGACGTTACAGTTGCTTCTCGTGTTCTAAGAATTTCAAAACAGAGGAGCATTGGATCGAACATGTGGAGACTGAACATCGACAGTTCGAAGGCTCGATTCGCTGCCCGCAGTGCACGGAAACGTTCGACACTGCGGAAAGCTTAACGGCCCatcgtcgtgagattcacggGGCTGAAGGTGACGATCCACTTGCATGTTACATATGCGGAAAGGTCTTCCAGACTATAACTTCGCTGAAGATCCATCGCGGACATCATTTCCGCGTTAATTCGAGGCTCAGCATTGGAAACATTGCGACTAACGAGCCGAGAAGAAATGATATTGAGGACGACGACGATCCCATATCAATAGTTCCGACAGTGGCGCCACCAACGCCCCAATCGTCCCAAATTCCGGTTAAAGTTCCCAGAGCAAGAAAATCCTTTCCTAATAGTCCCGCAAGACAATTGCAGAACATATTGCAGTGTCAGGTGTGCGACGATCGCTTCAACGATGTCGCTAATCTTCGCAAACATCTATGGGACGTTCATTGCGCACGAAATAAACCCGAGAAACCGTTTCAATCGACGAAACTTCAGTGTGAATTGTGTACCAATGTTTTGCCGGATGAAGAGAGTCTACGAAGTCACATGAAATGGCACGACAGCAATCCGATACTCGGCAACAACGTCGCCACCAAAAGGGAAGCGCAGACTCCAGCGGAATGCGATATATGTGGAAAGATCTACAGCTCTTACAGTAATCTCAAGAGACACAAACAACGGCATAAAGAGCGAAATCATTCGGTTGCCATGGAATTTCCGAAGAACGCGAGAGGCGGACGTTGGGGAGGCGAAGGCTTCACCTGCAGCGATTGCCAGAAGGTCTTCGCGACGAATTCGACGCTAAAGAAACATCGGGAGGTCTGCATGATGGCGCAACGCAAGTCAAACATTGGATCACTAAAGAGGCCGCGAGAGGCGCAGCAGGTGATCAATCCTATTAGACCGAAATTCGACTTCGATCAGATCGTCGATCGGGCAACCAGCGCCTTCCACGATGGCAACGAAGCTAAGAAACCTGTTACCTGCAATCTCTGCCGAAAAATCCTTCCAAGTCGCGCGGAGCTTCACAAGCATCGCGTTAGAGTTCACAAAGTCACCAACGACGACGGTGTCGACCTCTATGGCGATACGGATGATAATCATGTTTCCTGCACCTCGTGCAACAAGATATTCTCCAATTTGGCGAACATGAAGCAACACTTCACGAAAGTTCACGCAAACAACGCGCCCCGTTATCCTTGTAGTGTCGAAGGATGTCGTATGGTTTTCCGAAGTTACGCAGCTAAACGGAATCACGAGAAAACGCATGTAAACTTGTTGTACACGTGTCCCGTTTGTCCGAAACAAATGCCCACACGAGTGGCTATCAATGAACACATCGAACGCGATCACAAAGCAAATAGTTACGCTATGAACGCTAAGAAAGTCGAGAAGATGGCGAATttcaagaaaataaatttggaCAATTATGTCGTTAAGGGAGCGAATGGCAGGCAATGCCCGCTATGCAAAATCACTTATCCGAATTTTAAGGCATTGAAGATTCATTATCTTAAGATTCATGAAAACGTTGCTTAG
Protein Sequence
MDETVEVRNVENLCRLCLSTDEPRSSIFGDRATTTLSLATKIHNFLSIEILASDKLSTSICAECLMRVNKWQSYKESCLRSQEKLQRCLAERAETIPHIPNIKAEPMDFDEPPGSLETVPLTSDEEWESTIDERNESAEITVCTRSEKPISPRDSVTIKREAIEDEENQNTEIESICSTELLLNPMAVGTTKEDRVMEADSTQKLYNPKSLRGKKKKIRRGPATHYRGAKKFKQRCSFCQIYLHSKQTYKKHMERFHSGKKPEVKSKVAKKFSGVGGSESKKFVHEAVEEIEEMIEDVEDELISLEKDAPLTPVQQNIISQLKTFSCYSCQQTFNDRRSTLNHIRQHMPDLRPYTCIACLTEFADRSIYKLHCGASFQCAMKIALVVPENGTEKYFTCNMCLRPLSNRKELLSHLSRHSDKQYEQLVGGPFRSPPKLKPMASLPAVSRRNRETSANRIPVPYMNGDPSRNNLCDYCGMIYKHKPNLIKHREFCKKLSPDERICYRCVHCGATFMAFNKFQGHLKTVHKKKDYVCSHCSLAFKESNEYLDHHRQHRVRDNRLASVSGVSGRTRKIKTWESTAEESKNDSFKSLNRWSCALCPGSTFPTKAQLTEHRKVHLKLKIYSCSVCRRMFGRASALESHMAEHDASESPANTSQPIAVKFDPNVSKDSINSDPGLSSSECHTCGKVFASYHNLRRHVRNVHEAPGRYSCFSCSKNFKTEEHWIEHVETEHRQFEGSIRCPQCTETFDTAESLTAHRREIHGAEGDDPLACYICGKVFQTITSLKIHRGHHFRVNSRLSIGNIATNEPRRNDIEDDDDPISIVPTVAPPTPQSSQIPVKVPRARKSFPNSPARQLQNILQCQVCDDRFNDVANLRKHLWDVHCARNKPEKPFQSTKLQCELCTNVLPDEESLRSHMKWHDSNPILGNNVATKREAQTPAECDICGKIYSSYSNLKRHKQRHKERNHSVAMEFPKNARGGRWGGEGFTCSDCQKVFATNSTLKKHREVCMMAQRKSNIGSLKRPREAQQVINPIRPKFDFDQIVDRATSAFHDGNEAKKPVTCNLCRKILPSRAELHKHRVRVHKVTNDDGVDLYGDTDDNHVSCTSCNKIFSNLANMKQHFTKVHANNAPRYPCSVEGCRMVFRSYAAKRNHEKTHVNLLYTCPVCPKQMPTRVAINEHIERDHKANSYAMNAKKVEKMANFKKINLDNYVVKGANGRQCPLCKITYPNFKALKIHYLKIHENVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00398285; iTF_00841296;
90% Identity
iTF_00398285;
80% Identity
-