Csec005041.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- Prdm9
- Assembly
- GCA_002891405.2
- Location
- NW:304604-325449[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.7e-05 0.068 12.8 0.1 21 48 508 535 500 539 0.87 2 4 0.034 26 4.5 0.1 21 48 536 563 532 567 0.86 3 4 0.0031 2.4 7.8 0.1 21 48 564 591 560 595 0.86 4 4 0.003 2.3 7.9 0.1 22 51 593 622 590 624 0.87
Sequence Information
- Coding Sequence
- ATGGATAAGATTAAGTATACAGAACTGTCCAGCTTTTTaacaataaatgaatggaaaAACATGTCAGAATATGATAGAAAACGAAATTACAATATCCTGGAAAACTACAAGGTTTTGCATTCACTTGGGTTGAGTACCAAAAAACCTGACTTCATGTGTGTGACAAAGAGAAAATCTGGGGAAAAGAAGTGGAGTACAGGAAATAAACGTGTCAAGTTCAGACATCAGATGAAGaggaaggatgtggaagtgCTCAGTAAGCAACAGAATACCTGGCGACACATCCCATCACTGGCTGAGCTTGTACAAGATATACACGAAGATTTTTTAGGGTTTTCAGAAGCAGATTCTGTTGGACAAATTGTGGGATTATCTGCACTAAATGAGGCTATCAAGAAACTTGAATGTGAACTTCAAAGTCTTGTGGAAGCAGAGAATGTCTTTGAAAAGAAGACTGAAGATTCTCAGAGTCGTTACCCTAAGCGGTCAGTGACTCGCAAGGATTACACAGAAGGACATGTACCAAATGATGATGATTTTATATTTTGTGATGACTGTGGGCAGGAGTGGGAGGGAGACTGTCCTGTTCATGGAGCGCTTACAGTTGTTGAAGATACTAAGGTCCCAGCAGACCCTGAAGATTCTACTCGAGCAGACAGAACAGTGCCTTCTCAGCTGTACATAGCCCAGTCTGGCATCAGTGGTGCAGGACGTGGTGTGTGGTCCAGGGTACCTCTCTCCAAGGGGTTGAGATTTGGACCATACGAAGGTGCAAAAGTGAAATCCTCAAACAGTAATGGCTACTGCTGGCAGATCCGTCGCAACTATCGAGCATTATATTGTGTGGATGCCAAGAATTGTGGTATTGCTAACTGGATGCGCTACGTTAATTGTGCTCGACATGAGGAAGAACAGAATTTAATGGCATTTCAGTATAAAGGTGAAATGTATTATCGAACTGTCCGACCCATACCTGCCCATGTTGAGCTGCTAGTGTGGTATGGGGATGAGTATGGTCGAGAACTTGGTATTGTCATTGAGAATTTCCATAAACCACAACAGAAAAAATCTCTCAATGTGTCTCAATGTGTTGGATGCAACATTACATATTCAAGCCCAGTGTATTTGGAGAGACATGAAAAGTATTGTCGTGGATTAAATAATGCCAGCTTATCAAATAATGGTGCATTTTGTGATGTTAAGCGTGTTCCTAATATCAGTAAACAGAATGAGCAAAAGAGATATAATGACAACAACGTCTCTGGCGACATGATCCATATTAAGCAACCACATATCATTGATGATGGTACATGTGATGGGATCTCCTCTCATCACTCAGATTTCTCAAAACATGTGCAAGACAGATTATACCATTGTCATGATTGTGATAAGGGATTAACATTCCACAGCCATTTTGTGCACATGAGAATTCACACAGCGGAGAAGTCATATGAGTGCAAGGAATGTGGTCGTATGTTTTCTCGAATAGATGATCTGCGCACGCATATGAGAATTCACACAGGCGAGAAACCGTATGAGTGCAAGGAATGTGGTCATGTGTTTTCTCAAACAAGTAATCTGCGCAGGCATATGAGAATTCACACAGGGGAGAAGCCGTATGAGTGCAAGGAATGTGGTCGTATGTTTTCTCAAATAGGTGCTCTGCGCAGGCATATGAGAATTCACACAGGGGAGAAGCCGTATGAGTGCAAGGAATGTGGTCGTATGTTTTCTCAAACAAGTAATCTGCGCAAGCATATGAGAATTCACACAGGGGAGAAGCCGTATGAGTGCAAGGAATGTGGTCGTATGTTTTCTCAAACAAGTAATCTGCGCAAGCATATGAGAATTCACACAGGGGAGAAGCCGTATGAGTGTGAGGAGTGA
- Protein Sequence
- MDKIKYTELSSFLTINEWKNMSEYDRKRNYNILENYKVLHSLGLSTKKPDFMCVTKRKSGEKKWSTGNKRVKFRHQMKRKDVEVLSKQQNTWRHIPSLAELVQDIHEDFLGFSEADSVGQIVGLSALNEAIKKLECELQSLVEAENVFEKKTEDSQSRYPKRSVTRKDYTEGHVPNDDDFIFCDDCGQEWEGDCPVHGALTVVEDTKVPADPEDSTRADRTVPSQLYIAQSGISGAGRGVWSRVPLSKGLRFGPYEGAKVKSSNSNGYCWQIRRNYRALYCVDAKNCGIANWMRYVNCARHEEEQNLMAFQYKGEMYYRTVRPIPAHVELLVWYGDEYGRELGIVIENFHKPQQKKSLNVSQCVGCNITYSSPVYLERHEKYCRGLNNASLSNNGAFCDVKRVPNISKQNEQKRYNDNNVSGDMIHIKQPHIIDDGTCDGISSHHSDFSKHVQDRLYHCHDCDKGLTFHSHFVHMRIHTAEKSYECKECGRMFSRIDDLRTHMRIHTGEKPYECKECGHVFSQTSNLRRHMRIHTGEKPYECKECGRMFSQIGALRRHMRIHTGEKPYECKECGRMFSQTSNLRKHMRIHTGEKPYECKECGRMFSQTSNLRKHMRIHTGEKPYECEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396647; iTF_00396463;
- 90% Identity
- iTF_00396647; iTF_00396463;
- 80% Identity
- iTF_00396647; iTF_00396463;