Csec005041.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cryptotermes secundus
Gene Symbol
Prdm9
Assembly
GCA_002891405.2
Location
NW:304604-325449[-]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 8.6 1.2e+04 -4.1 0.0 12 25 176 189 174 193 0.77
2 7 2.4 3.3e+03 -2.3 0.1 13 28 357 372 349 373 0.74
3 7 0.0046 6.4 6.4 0.9 6 40 474 504 469 507 0.84
4 7 7.1e-05 0.098 12.2 2.1 14 40 509 532 502 535 0.84
5 7 0.097 1.3e+02 2.2 0.5 17 40 540 560 532 563 0.85
6 7 0.00045 0.63 9.6 3.0 6 40 558 588 556 591 0.84
7 7 0.00025 0.34 10.5 0.9 17 40 596 616 588 618 0.88

Sequence Information

Coding Sequence
ATGGATAAGATTAAGTATACAGAACTGTCCAGCTTTTTaacaataaatgaatggaaaAACATGTCAGAATATGATAGAAAACGAAATTACAATATCCTGGAAAACTACAAGGTTTTGCATTCACTTGGGTTGAGTACCAAAAAACCTGACTTCATGTGTGTGACAAAGAGAAAATCTGGGGAAAAGAAGTGGAGTACAGGAAATAAACGTGTCAAGTTCAGACATCAGATGAAGaggaaggatgtggaagtgCTCAGTAAGCAACAGAATACCTGGCGACACATCCCATCACTGGCTGAGCTTGTACAAGATATACACGAAGATTTTTTAGGGTTTTCAGAAGCAGATTCTGTTGGACAAATTGTGGGATTATCTGCACTAAATGAGGCTATCAAGAAACTTGAATGTGAACTTCAAAGTCTTGTGGAAGCAGAGAATGTCTTTGAAAAGAAGACTGAAGATTCTCAGAGTCGTTACCCTAAGCGGTCAGTGACTCGCAAGGATTACACAGAAGGACATGTACCAAATGATGATGATTTTATATTTTGTGATGACTGTGGGCAGGAGTGGGAGGGAGACTGTCCTGTTCATGGAGCGCTTACAGTTGTTGAAGATACTAAGGTCCCAGCAGACCCTGAAGATTCTACTCGAGCAGACAGAACAGTGCCTTCTCAGCTGTACATAGCCCAGTCTGGCATCAGTGGTGCAGGACGTGGTGTGTGGTCCAGGGTACCTCTCTCCAAGGGGTTGAGATTTGGACCATACGAAGGTGCAAAAGTGAAATCCTCAAACAGTAATGGCTACTGCTGGCAGATCCGTCGCAACTATCGAGCATTATATTGTGTGGATGCCAAGAATTGTGGTATTGCTAACTGGATGCGCTACGTTAATTGTGCTCGACATGAGGAAGAACAGAATTTAATGGCATTTCAGTATAAAGGTGAAATGTATTATCGAACTGTCCGACCCATACCTGCCCATGTTGAGCTGCTAGTGTGGTATGGGGATGAGTATGGTCGAGAACTTGGTATTGTCATTGAGAATTTCCATAAACCACAACAGAAAAAATCTCTCAATGTGTCTCAATGTGTTGGATGCAACATTACATATTCAAGCCCAGTGTATTTGGAGAGACATGAAAAGTATTGTCGTGGATTAAATAATGCCAGCTTATCAAATAATGGTGCATTTTGTGATGTTAAGCGTGTTCCTAATATCAGTAAACAGAATGAGCAAAAGAGATATAATGACAACAACGTCTCTGGCGACATGATCCATATTAAGCAACCACATATCATTGATGATGGTACATGTGATGGGATCTCCTCTCATCACTCAGATTTCTCAAAACATGTGCAAGACAGATTATACCATTGTCATGATTGTGATAAGGGATTAACATTCCACAGCCATTTTGTGCACATGAGAATTCACACAGCGGAGAAGTCATATGAGTGCAAGGAATGTGGTCGTATGTTTTCTCGAATAGATGATCTGCGCACGCATATGAGAATTCACACAGGCGAGAAACCGTATGAGTGCAAGGAATGTGGTCATGTGTTTTCTCAAACAAGTAATCTGCGCAGGCATATGAGAATTCACACAGGGGAGAAGCCGTATGAGTGCAAGGAATGTGGTCGTATGTTTTCTCAAATAGGTGCTCTGCGCAGGCATATGAGAATTCACACAGGGGAGAAGCCGTATGAGTGCAAGGAATGTGGTCGTATGTTTTCTCAAACAAGTAATCTGCGCAAGCATATGAGAATTCACACAGGGGAGAAGCCGTATGAGTGCAAGGAATGTGGTCGTATGTTTTCTCAAACAAGTAATCTGCGCAAGCATATGAGAATTCACACAGGGGAGAAGCCGTATGAGTGTGAGGAGTGA
Protein Sequence
MDKIKYTELSSFLTINEWKNMSEYDRKRNYNILENYKVLHSLGLSTKKPDFMCVTKRKSGEKKWSTGNKRVKFRHQMKRKDVEVLSKQQNTWRHIPSLAELVQDIHEDFLGFSEADSVGQIVGLSALNEAIKKLECELQSLVEAENVFEKKTEDSQSRYPKRSVTRKDYTEGHVPNDDDFIFCDDCGQEWEGDCPVHGALTVVEDTKVPADPEDSTRADRTVPSQLYIAQSGISGAGRGVWSRVPLSKGLRFGPYEGAKVKSSNSNGYCWQIRRNYRALYCVDAKNCGIANWMRYVNCARHEEEQNLMAFQYKGEMYYRTVRPIPAHVELLVWYGDEYGRELGIVIENFHKPQQKKSLNVSQCVGCNITYSSPVYLERHEKYCRGLNNASLSNNGAFCDVKRVPNISKQNEQKRYNDNNVSGDMIHIKQPHIIDDGTCDGISSHHSDFSKHVQDRLYHCHDCDKGLTFHSHFVHMRIHTAEKSYECKECGRMFSRIDDLRTHMRIHTGEKPYECKECGHVFSQTSNLRRHMRIHTGEKPYECKECGRMFSQIGALRRHMRIHTGEKPYECKECGRMFSQTSNLRKHMRIHTGEKPYECKECGRMFSQTSNLRKHMRIHTGEKPYECEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00396933;
90% Identity
iTF_00396933;
80% Identity
iTF_00396933;