Csec001007.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:1400170-1407215[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0008 0.63 9.7 0.1 21 45 172 196 164 204 0.87 2 10 1.1 8.4e+02 -0.3 0.0 26 44 205 223 199 226 0.88 3 10 9.4e-05 0.074 12.7 0.0 21 48 228 254 224 257 0.89 4 10 0.17 1.3e+02 2.3 0.1 19 44 254 279 252 289 0.80 5 10 0.0039 3 7.5 0.3 22 45 285 308 281 317 0.85 6 10 1.6 1.3e+03 -0.9 0.0 19 44 310 335 308 344 0.81 7 10 0.021 17 5.2 0.0 22 45 341 364 338 371 0.83 8 10 0.2 1.5e+02 2.1 0.1 21 44 368 391 363 395 0.84 9 10 0.013 9.9 5.9 0.0 21 46 396 421 392 427 0.86 10 10 0.14 1.1e+02 2.5 0.0 21 51 424 453 420 455 0.83
Sequence Information
- Coding Sequence
- atggatctgataATAACGGTAGAAGGAACAACTCCAGCTTCTACACCAAAGAAGGAAGAGCTTATTGATATAAAATATGAAGACCATTATGATCCAGATCCCACATCAGCAATCCCGAATGAAGATCAGCAGTTCTTGGATGCGGTTAAGACGGAACCTGATTCAGATAGTGAATTTGATCATGATCCACTCTCGAATGTCAAATATGAGGAGCCTGTTTGTGTACTACTCAAGAGTGAACCGTTTgaAGCATCAGATTCCACGTCAGAAGGTGATGAAGTAATGAAAGAGGAATGTGTCTCGAGCAGTACCAGTGAGCACAGTTTCATCAGCCACCAGTATGAAGAAAATGGTACAGAAGTTTCACCTCGGCTGACATCAGAAGGGATATCAATGAACGAAGTGTCTGGGATGTGTAGTAAGGGGTCCTCCTGTGGTGGAAATTTGAAGAATTGTACAAATGTGGACTCTGAAGAAATATTGCTGACAAGCTCAAAATGTAAAGACCGAGTGACAGAAAAAACCTTTACATGTGAAATATGCTCCAAAGTATTTCCATACAATAGTAACCTGAAACGTCATGTTCGTACACACACTGGAATTAAGTCATTTAAATGTGACATATGTGGTAAAGTTTTTTCAGAGAGCGGAAGTGTGAAACTTCACCTTCGGACACACACAGGTGAAAAGCCTTTCAAGTGTGACATATGTGGGAAAGTTTTCTCACAGAGTGGAAACCTGAAGCTTCACACACTCAGACACAAAGGAGAAAGAAATTTCAAGTGTAACATTTGTACCAAGGCATTCCTAAATAATAGTAAACTTAAACGACATATTCTTACACATATGAGAGAAAAATCATTCGCATGTGATACATGTGGGAGAGTCTTCTCACAAAGTAGACACCTGAAACATCACATACGTAGGCACAATGGAGAAAGATCATTCAAATGTGATGTATGTTCCAAAGTTTTTGCTAATAATACTGTACTGAAGTGTCACATTCTTATACACACAGGAGAGAAATCATTCAAATGTGACATATGTGGGAAAGTATTTTCACAGAGTGGTCATCTGAAACTTCACATTCGCACTCACACTGGTGAGAAGCCTTTCAAATGTAACATATGCACTAGAGCGTTCTCAGATAATAGTAAACTGAAGCATCACATTCGTACGCACACAGGGGAGAAACCATTCAAATGTGACACATGTGGGAAAGTGTTTTCACTGAGTTGGAATCTGAAGCATCACATGCGGACGCACACAGGAGAAAAGCCTTTCAAATGTGAGAAATGTGGAAGAGTGTTTTCAGGGAATAGAAGTCTGAAACATCATGCACTAACACATGTAGGAGAACCCCAATTTGAATATAATGTATATGAAAGATTTCCCCCAGAATGA
- Protein Sequence
- MDLIITVEGTTPASTPKKEELIDIKYEDHYDPDPTSAIPNEDQQFLDAVKTEPDSDSEFDHDPLSNVKYEEPVCVLLKSEPFEASDSTSEGDEVMKEECVSSSTSEHSFISHQYEENGTEVSPRLTSEGISMNEVSGMCSKGSSCGGNLKNCTNVDSEEILLTSSKCKDRVTEKTFTCEICSKVFPYNSNLKRHVRTHTGIKSFKCDICGKVFSESGSVKLHLRTHTGEKPFKCDICGKVFSQSGNLKLHTLRHKGERNFKCNICTKAFLNNSKLKRHILTHMREKSFACDTCGRVFSQSRHLKHHIRRHNGERSFKCDVCSKVFANNTVLKCHILIHTGEKSFKCDICGKVFSQSGHLKLHIRTHTGEKPFKCNICTRAFSDNSKLKHHIRTHTGEKPFKCDTCGKVFSLSWNLKHHMRTHTGEKPFKCEKCGRVFSGNRSLKHHALTHVGEPQFEYNVYERFPPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396458;
- 90% Identity
- iTF_00396458;
- 80% Identity
- iTF_00396458;