Cpra003401.1
Basic Information
- Insect
- Cryptocheilus praepositus
- Gene Symbol
- -
- Assembly
- GCA_033815515.1
- Location
- JAWWQZ010000044.1:684955-690646[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.18 20 6.3 1.4 1 23 304 326 304 326 0.91 2 12 3.3e-05 0.0037 18.1 2.5 1 23 331 355 331 355 0.94 3 12 0.079 8.7 7.5 2.8 1 23 419 443 419 443 0.96 4 12 1.8e-07 2e-05 25.2 1.2 1 23 449 471 449 471 0.99 5 12 0.0031 0.34 11.9 0.1 1 23 480 503 480 503 0.89 6 12 2.4e-07 2.6e-05 24.9 3.6 1 23 509 531 509 531 0.98 7 12 7.1e-06 0.00078 20.2 0.9 1 23 537 559 537 559 0.98 8 12 3.3e-05 0.0036 18.1 2.0 1 23 565 587 565 587 0.97 9 12 1.4e-08 1.6e-06 28.7 1.8 1 23 593 615 593 615 0.99 10 12 1.1e-05 0.0012 19.6 5.7 1 23 621 643 621 643 0.98 11 12 1.1e-05 0.0012 19.6 1.6 1 23 677 699 677 699 0.98 12 12 2.6e-07 2.8e-05 24.8 1.5 1 23 705 727 705 727 0.98
Sequence Information
- Coding Sequence
- ATGGTGGATGTCCGTCTTTATGACTCCACTATTTGTCGGTTATGCGCCGAAGACAATGGTAACGGGGAATTATTGTACGCACACAGCAATGACGATCCCGATTTAAGTACCATGGTAAATCGTTATTTACCGCTGAAGgtCAGAGACGATGGCAAATTACCGAGAACTATTTGCCCGGGCTGTAATATACAGCTGGAGGCAACAGTACAGTTCTTTGAATTATTGGTTGATGGCCAGCGGAAGATTCGTGAGATGTGGAAAGTTCAAGTCGAGAATCAACGTAAAGCACAGCGAGAACGTATGCGCGCTGAAAGAGAGAACATTGAACTGGATACAGAGACATCCGAATTGGATAATGTCGCACAAAACAATGAGGATGAACAATTTGAACagcaaattattattaaaaTAATGCCTGATGGGTCAATGTATGCGGCAGAAAATGAGATAAGTTTGCAGATGGAAGGTTTAAGTAAGCCAAGACGTAAAAGGGGTCGTCCACCGAAAGTCCACACAGAGGTGGAGAATAAGCCACCTAGGCCAGAAGAGCTAGTACAGGAGGGAGTAAGTcaagaagaggaagagaaacaTGATGAAGAGGTTGAAGAAGTAGATGGTGATGGAAGACGACGCAGAAAACGTAAAGTTCCGAAAAGGTTTATGGAAGCTGTTCAGGGAAAGGAATTGGAAAGAATCTTCAAAGAGGAAGGTGTAATAGATGAAGAGGATGAGGAAGAACCAGATCATTTtgaggattctgaagaaaggcTTAATGTAGCAATTCCAGATGGGCAAGAAGaaataattgGTCATTTAGAGACCGAAGAAGGAAAAGACTTAGGTGAATTAGTAATTGTAAATAGGGGAAGAGGACGGGGAAGGCCAAAACTACGAcgacgaaaaaataaatttacatgccAATTGTGCGGTAGAGGTTTCTTACAGCGTAGCCGATACATCGTACACAAGAGTTTCCATAAAGGAGTGAAGTACGAATGTTCCGAGTGCAAGAAATTATTTACGAATAAAGACAATTTCATGCTACATCAAAAGACAACTCAGCATACCGGTGGTGGTATTACGGAAACTCCAGAGGAACATGAGGTGCATATTCAGGAATCGGCACTGGAACCTGCGAATCCACCGCGACAAACTAATGGGGACACTGTGCTGAACACGCTTACAAACGAAAAAGTTCCAGAAAAAACTGTGGTTGATCCGAACATCAACAATGATCCTAATGTCGATATGAGATTTACGTGCAATCACTGTAGTGACAAGCATTTTCCGACGAAGCAAGCCTACGAATTACACGTTAAGGTAGCTCACGAGGGCGAGAAGCCATTTAcatgtaatatttgtaataaaagttTTGCCTATCAGACTAATTTGAAGGGACACATGTTAACTCACGAGGGTATTAAAAATGAGAAAGGATACCCTTGCGATATCTGTGGAAAAGTATTGAACCATCCAAGTTCGGTTGTGTATCACAAAGAAGCCGAACATAACAACGGTCGTCGTTTTGTGTGCAATAAGTGTGGGAAGAGCTTTAAGCACAAACAGCTGTTGCAACGACATCAGCTTGTTCATTCGGACGATAGACCTTATGTCTGTAAATCGTGTAGTGCCAGCTTCAAAACTAAGGCAAATCTTATAAATCATCAGTCAACGCACACCGGTGAAAAGAAGTATTTCTGCGAAATATGCGGGCAACAGTTCGCGCATAAAACTAGTCTCACTCTACATTACAGATGGCATACCGGCCATAAACCGTACACATGTGACGTGTGTCATAAAAGTTTTTCGCAGAACGGAAACCTCCAGGAGCATATGCGCATACACACCGGTGAGAAACCGTATTGTTGTGATTACTGCGGCCGTAAATTCACAACTTCTTCGCAGTTTAAACTGCATGTAAAGCGCCACACCGGCGAACGACCCTGGAAGTGTGAATTTTGCGCGAAATGCTTCTTACACAAAGACACTTGGAAATGTCATGTACGCAGACATAAAGGAGAGCGCCCCTTTCAATGTGCCCACTGCAATCGAGGTTTCACGGAGCAATGGGCTTTGAAAAAGCACCTTCGTCTCCATACCGGTGAAAAGCCATATTCGTGCGACGTGTGTGGCAAGGCGTTTGCAGATTGTTCGAATTTGACGAAACATAAAAAGGTTCACAGAGACAATAAGGTTTTAACGATGGCCGACGCATCCGAAGGTTCAGCCATTGGAGAAGTGTGGCAAATTTTGCCAAGTACTCAGGAAGAAGATGATAACTCGCTTAGCGATCAAATGACTCAAGTAATAGCGACGGACGAAGGATCAGGAGATGGAATTCCACAGATTATTTATGTGTCATATCAAGATCCTGATGATCCAAATCAATCTCGCACCTTGCATTTCGTTGATGCTGGACATATGATGCGAAGCAAAGGACAAATAACAACTACAACTGCTCAATCGCTGCCCCGATTGGACGTAGATAACGATGAAATAATTTCTCAACAGCCCCAAGGCAACACAAATAACGGTAACAATGCACGCATGGACATGGAATTAACGGAGCCAGACTTGCAGCTTCagATTACCGATGAAGAGGGAAATCCGATTCCACTTTCGATACAAGATGCCCGTCAATTGTTGTCTCAAGGGCAATTTGTCAGTCAACTCAATGACGGGCAAACGATCCGTGTACATTCTGGTGTAATTTCTCAGGAACTAGCAAATTCTTTAAGCGTGCACGTTAATCAGCAGAATGCGATCGAAGCTGTGAATGCTGCATCCATGGAAGACAGAGTCAAATCTACAGAGGTGATATCCAATGACGCAGAGGCAATTGTTAAGGCTCTTGAGGATGAAGATACCGACGCGACGACAGTAGCAACAATAAATCAGATGGGTGGAGAGGAACAAACAGGAATGTCCGATGGCGAGCAAGCCATTGAATTTACCACGCAGGATGGACAAAAATTGCGCCTCGTTACGTCGTACCATGTTGATCCAATGCAGCTTGCCTCTGAGTACCTGACTATTGTGTAA
- Protein Sequence
- MVDVRLYDSTICRLCAEDNGNGELLYAHSNDDPDLSTMVNRYLPLKVRDDGKLPRTICPGCNIQLEATVQFFELLVDGQRKIREMWKVQVENQRKAQRERMRAERENIELDTETSELDNVAQNNEDEQFEQQIIIKIMPDGSMYAAENEISLQMEGLSKPRRKRGRPPKVHTEVENKPPRPEELVQEGVSQEEEEKHDEEVEEVDGDGRRRRKRKVPKRFMEAVQGKELERIFKEEGVIDEEDEEEPDHFEDSEERLNVAIPDGQEEIIGHLETEEGKDLGELVIVNRGRGRGRPKLRRRKNKFTCQLCGRGFLQRSRYIVHKSFHKGVKYECSECKKLFTNKDNFMLHQKTTQHTGGGITETPEEHEVHIQESALEPANPPRQTNGDTVLNTLTNEKVPEKTVVDPNINNDPNVDMRFTCNHCSDKHFPTKQAYELHVKVAHEGEKPFTCNICNKSFAYQTNLKGHMLTHEGIKNEKGYPCDICGKVLNHPSSVVYHKEAEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHSDDRPYVCKSCSASFKTKANLINHQSTHTGEKKYFCEICGQQFAHKTSLTLHYRWHTGHKPYTCDVCHKSFSQNGNLQEHMRIHTGEKPYCCDYCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKCFLHKDTWKCHVRRHKGERPFQCAHCNRGFTEQWALKKHLRLHTGEKPYSCDVCGKAFADCSNLTKHKKVHRDNKVLTMADASEGSAIGEVWQILPSTQEEDDNSLSDQMTQVIATDEGSGDGIPQIIYVSYQDPDDPNQSRTLHFVDAGHMMRSKGQITTTTAQSLPRLDVDNDEIISQQPQGNTNNGNNARMDMELTEPDLQLQITDEEGNPIPLSIQDARQLLSQGQFVSQLNDGQTIRVHSGVISQELANSLSVHVNQQNAIEAVNAASMEDRVKSTEVISNDAEAIVKALEDEDTDATTVATINQMGGEEQTGMSDGEQAIEFTTQDGQKLRLVTSYHVDPMQLASEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090139;
- 90% Identity
- iTF_01255858;
- 80% Identity
- -