Cpri018481.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:3760864-3764587[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.099 60 4.1 0.2 10 44 37 71 33 77 0.84 2 14 0.68 4.1e+02 1.4 0.0 21 44 104 127 89 136 0.76 3 14 2.5 1.5e+03 -0.4 0.3 21 34 132 145 129 162 0.71 4 14 2.7 1.6e+03 -0.5 0.1 18 44 157 183 150 191 0.82 5 14 0.039 23 5.4 0.0 14 44 180 211 174 219 0.77 6 14 0.12 74 3.8 0.0 21 44 216 239 213 243 0.91 7 14 0.0034 2.1 8.7 0.1 21 45 244 268 240 275 0.92 8 14 0.79 4.8e+02 1.2 0.1 21 44 300 323 296 328 0.87 9 14 0.0027 1.7 9.1 0.1 10 47 331 368 323 373 0.84 10 14 0.05 30 5.0 0.0 21 45 370 394 368 398 0.89 11 14 1 6.1e+02 0.8 0.0 21 44 398 421 394 430 0.81 12 14 0.55 3.3e+02 1.7 0.0 21 44 454 477 451 481 0.87 13 14 0.11 69 3.9 0.1 21 46 482 507 474 513 0.84 14 14 0.058 35 4.8 0.2 16 46 505 535 497 542 0.83
Sequence Information
- Coding Sequence
- ATGAGCGACATTGAAGCGAccacttgcgattggtgcttaaAAGAAGCACCGGCGCAGGAGATCGAGGAGAAGCTATGGCGCCTCTGGAAAGtaatcagcgcagagCCTAGTAACGTGACGAGACCTTCACGGAGGTATACAAGAgtaaagccttttaaatgccCGACGTGTAATAAGGCCCTTACCACATCGGGCGCTTTGAAGATCCACATGCGTGCGCACACCGGCGGAAAACGGTTCAAGTGCTCCCTCTGCGATAAAGCCTTCACCGAGGGGAGCAGATTGAGGAAACACCAAGTCGCTCATACCGACGAGAGGCCTTTCGAATGCAAGATCTGTAACTTTGCCTTCGCTCGCCCGGGAGGCCTAAGGCTGCACATGCTCGTtcatacgggcgagaagccgtTTAAGTGTCCGTATTGCGATAGGGCTTTCCCTAGGGAGTACAGCTTCAGTAAACACGTGCAGAGACGTGCGTGCGAGAAGTCTTTTAAGTGTTCGCATTGCGACGAGGTTTTCGCTCGGCCTGGCGATTTGAAACGGCACACGTACTCTCATACGGGcgaaaaacctttcaaatgttccTCTTGTGATAAGACTTTTCGTAGGTCGGACAGTTTGAGAATGCACAAGTGGATCCATGCCGATgagaagccttttaagtgttcgcTCTGCACCAAGTCCTTCGCTTATTCCACCAGTTTGAAGAGGCACATGTGCTTTCATACAGGTGAGAGGCCCTTTAAGTGTCCCTCTTGTGATAAGACTTTTTCTCTGGCGGAAAATATGCGAAGACACCTACGGGGACATGCGGGCGAAAAGCGCTTTAAGTGTTCCATTTGCGACAAGAATTATACCACGTTTGGTATATTGAAGAGGCACATGCTCGTCCATACGGGGGAAAGGCCTTTCAAATGTTCCGTTTGTGATAAGACTTTTCCTAGATCGTGCAGATTGAAAAAACACAAGTTACTCCATGCCGAGACCGTCGCCGGTTCGAAGAGACACAAGTCAGTCCGTGCCGATGAGAAGCCTTCTAAGTGTTCACTCTGCACCAAGACCTTCGTTTATTCCATCAGTTTGAAGAGACACATGCGCtttcatacaggtgagaagccCTTTAAGTGTCCCTCTTGTGATAAGGCTTTTCCTTGGCGGATTAATCTGCAAAGGCACTTACGGAAGCACACGGGCGAAAGGCCCTTTAAGTGTTCCATTTGCGACAAGACTTTCACCATGCCTGATGGTCTAAGGTGGCACATGCGCACTCATACAGGGAAAAGACCCTTCGAATGTTCGGTTTGTAATAAGACGTTTATTACGCCGAGCAGTTTGAAGATACACAAGTTGATCCATGCCGATGAGAAGCCCTTTAAGTGTTCCATTTGCGACAAGACTTTCGCCATGTCTTATGGTTTAAAGGCGCACATGCGCACTCATACAGGGGAAAGACCCTTCGAATGTTCggtttgtaataagacttttactagGGCGAAccatttgaagagacacaagtCAGTCCATGCCGATgagaagccttttaagtgttcgcTCTGTACCGAGACCTTCACTCGTTCGAACGCTTTGAAGCAGCACATGCGCGCtcatacgggcgagaagccctATAAGCAGGGAGCGAAGAAAGATCCGGGAGTCCCGTTAGGAGAAGGGGACTCGAGGCACGTCTCCCATAAGGACAAGTACGGATCGCTGCTGGTCGATATGCGAGGAGAAGTCGTCGGAGGGCGCAAAAAGTaa
- Protein Sequence
- MSDIEATTCDWCLKEAPAQEIEEKLWRLWKVISAEPSNVTRPSRRYTRVKPFKCPTCNKALTTSGALKIHMRAHTGGKRFKCSLCDKAFTEGSRLRKHQVAHTDERPFECKICNFAFARPGGLRLHMLVHTGEKPFKCPYCDRAFPREYSFSKHVQRRACEKSFKCSHCDEVFARPGDLKRHTYSHTGEKPFKCSSCDKTFRRSDSLRMHKWIHADEKPFKCSLCTKSFAYSTSLKRHMCFHTGERPFKCPSCDKTFSLAENMRRHLRGHAGEKRFKCSICDKNYTTFGILKRHMLVHTGERPFKCSVCDKTFPRSCRLKKHKLLHAETVAGSKRHKSVRADEKPSKCSLCTKTFVYSISLKRHMRFHTGEKPFKCPSCDKAFPWRINLQRHLRKHTGERPFKCSICDKTFTMPDGLRWHMRTHTGKRPFECSVCNKTFITPSSLKIHKLIHADEKPFKCSICDKTFAMSYGLKAHMRTHTGERPFECSVCNKTFTRANHLKRHKSVHADEKPFKCSLCTETFTRSNALKQHMRAHTGEKPYKQGAKKDPGVPLGEGDSRHVSHKDKYGSLLVDMRGEVVGGRKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392918;
- 90% Identity
- iTF_00392918;
- 80% Identity
- iTF_00392918;